data_DLY
# 
_chem_comp.id                                    DLY 
_chem_comp.name                                  D-LYSINE 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H14 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        146.188 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     DLY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1C4B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DLY N   N   N 0 1 N N N Y Y N 1.958 -1.185 0.419  1.770  0.232  -1.331 N   DLY 1  
DLY CA  CA  C 0 1 N N R Y N N 2.544 0.113  0.712  0.326  0.498  -1.348 CA  DLY 2  
DLY C   C   C 0 1 N N N Y N Y 1.902 1.172  -0.185 -0.271 -0.054 -2.616 C   DLY 3  
DLY O   O   O 0 1 N N N Y N Y 0.678 1.242  -0.292 0.220  -1.024 -3.143 O   DLY 4  
DLY CB  CB  C 0 1 N N N N N N 2.435 0.424  2.206  -0.329 -0.173 -0.140 CB  DLY 5  
DLY CG  CG  C 0 1 N N N N N N 2.618 -0.842 3.046  0.277  0.387  1.147  CG  DLY 6  
DLY CD  CD  C 0 1 N N N N N N 1.297 -1.601 3.190  -0.378 -0.283 2.355  CD  DLY 7  
DLY CE  CE  C 0 1 N N N N N N 1.544 -3.098 3.389  0.228  0.277  3.642  CE  DLY 8  
DLY NZ  NZ  N 0 1 N N N N N N 1.361 -3.467 4.810  -0.401 -0.367 4.802  NZ  DLY 9  
DLY OXT OXT O 0 1 N Y N Y N Y 2.756 1.971  -0.809 -1.350 0.530  -3.160 OXT DLY 10 
DLY H   H   H 0 1 N N N Y Y N 0.978 -1.170 0.222  2.143  0.602  -2.193 H   DLY 11 
DLY H2  HN2 H 0 1 N Y N Y Y N 2.024 -1.424 -0.570 1.882  -0.769 -1.373 H2  DLY 12 
DLY HA  HA  H 0 1 N N N Y N N 3.606 0.053  0.471  0.153  1.573  -1.304 HA  DLY 13 
DLY HB2 1HB H 0 1 N N N N N N 1.462 0.868  2.419  -0.157 -1.248 -0.184 HB2 DLY 14 
DLY HB3 2HB H 0 1 N N N N N N 3.189 1.161  2.484  -1.401 0.023  -0.152 HB3 DLY 15 
DLY HG2 1HG H 0 1 N N N N N N 2.999 -0.577 4.031  0.104  1.463  1.191  HG2 DLY 16 
DLY HG3 2HG H 0 1 N N N N N N 3.363 -1.486 2.579  1.349  0.191  1.159  HG3 DLY 17 
DLY HD2 1HD H 0 1 N N N N N N 0.685 -1.444 2.301  -0.206 -1.359 2.311  HD2 DLY 18 
DLY HD3 2HD H 0 1 N N N N N N 0.737 -1.204 4.036  -1.450 -0.087 2.343  HD3 DLY 19 
DLY HE2 1HE H 0 1 N N N N N N 2.554 -3.352 3.067  0.055  1.352  3.686  HE2 DLY 20 
DLY HE3 2HE H 0 1 N N N N N N 0.857 -3.671 2.766  1.300  0.080  3.655  HE3 DLY 21 
DLY HZ1 1HZ H 0 1 N N N N N N 0.413 -3.297 5.129  0.027  0.031  5.624  HZ1 DLY 22 
DLY HZ2 2HZ H 0 1 N N N N N N 1.976 -2.941 5.422  -1.367 -0.074 4.808  HZ2 DLY 23 
DLY HXT HXT H 0 1 N Y N Y N Y 2.357 2.628  -1.366 -1.734 0.175  -3.974 HXT DLY 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DLY N   CA  SING N N 1  
DLY N   H   SING N N 2  
DLY N   H2  SING N N 3  
DLY CA  C   SING N N 4  
DLY CA  CB  SING N N 5  
DLY CA  HA  SING N N 6  
DLY C   O   DOUB N N 7  
DLY C   OXT SING N N 8  
DLY CB  CG  SING N N 9  
DLY CB  HB2 SING N N 10 
DLY CB  HB3 SING N N 11 
DLY CG  CD  SING N N 12 
DLY CG  HG2 SING N N 13 
DLY CG  HG3 SING N N 14 
DLY CD  CE  SING N N 15 
DLY CD  HD2 SING N N 16 
DLY CD  HD3 SING N N 17 
DLY CE  NZ  SING N N 18 
DLY CE  HE2 SING N N 19 
DLY CE  HE3 SING N N 20 
DLY NZ  HZ1 SING N N 21 
DLY NZ  HZ2 SING N N 22 
DLY OXT HXT SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DLY SMILES           ACDLabs              10.04 "O=C(O)C(N)CCCCN"                                                           
DLY SMILES_CANONICAL CACTVS               3.341 "NCCCC[C@@H](N)C(O)=O"                                                      
DLY SMILES           CACTVS               3.341 "NCCCC[CH](N)C(O)=O"                                                        
DLY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CCN)C[C@H](C(=O)O)N"                                                     
DLY SMILES           "OpenEye OEToolkits" 1.5.0 "C(CCN)CC(C(=O)O)N"                                                         
DLY InChI            InChI                1.03  "InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m1/s1" 
DLY InChIKey         InChI                1.03  KDXKERNSBIXSRK-RXMQYKEDSA-N                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DLY "SYSTEMATIC NAME" ACDLabs              10.04 D-lysine                        
DLY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2,6-diaminohexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DLY "Create component"  1999-07-08 RCSB 
DLY "Modify descriptor" 2011-06-04 RCSB 
DLY "Modify backbone"   2023-11-03 PDBE 
# 
