<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1094" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2004-05-26</deposition>
         <header_release>2004-08-24</header_release>
         <map_release>2004-09-24</map_release>
         <update>2012-10-17</update>
      </key_dates>
      <title>Electron microscopic analysis of KvAP voltage-dependent K+ channels in an open conformation.</title>
      <authors_list>
         <author>Jiang QX</author>
         <author>Wang DN</author>
         <author>MacKinnon R</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Jiang QX</author>
               <author order="2">Wang DN</author>
               <author order="3">MacKinnon R</author>
               <title>Electron microscopic analysis of KvAP voltage-dependent K+ channels in an open conformation.</title>
               <journal>NATURE</journal>
               <volume>430</volume>
               <first_page>806</first_page>
               <last_page>810</last_page>
               <year>2004</year>
               <external_references type="PUBMED">15306816</external_references>
               <external_references type="DOI">doi:10.1038/nature02735</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>KvAP complexed with 33H1 Fab fragments</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>KvAP complexed with 33H1 Fab fragments</name>
            <details>none</details>
            <oligomeric_state>one</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.34</experimental>
               <theoretical units="MDa">0.3</theoretical>
               <method>the sequence and the estimate of detergent
      micelle size</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="KvAP">KvAP potassium channel</name>
            <natural_source database="NCBI">
               <organism ncbi="56636">Aeropyrum pernix</organism>
               <synonym_organism>A. pernix</synonym_organism>
               <cellular_location>plasma membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.12</experimental>
               <theoretical units="MDa">0.12</theoretical>
            </molecular_weight>
            <details>one channel</details>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>tetramer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_plasmid>pQE60</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="33H1Fab">33H1 Fab fragments</name>
            <natural_source database="NCBI">
               <organism ncbi="10090">Mus musculus</organism>
               <synonym_organism>House Mouse</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.18</experimental>
               <theoretical units="MDa">0.18</theoretical>
            </molecular_weight>
            <details>four Fab fragments</details>
            <number_of_copies>4</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">5.0</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>40 mM KCl, 60 mM NaCl, 20 mM Tris-HCl pH 7.4,
          5.0       mM DM</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>mix with equal volume of 65% ammonium molybdate</details>
               </staining>
               <grid>
                  <details>400 mesh grids with holey carbon film</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">60</chamber_humidity>
                  <chamber_temperature units="K">298</chamber_temperature>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: home-made</details>
                  <method>8</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM200T</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">1.1</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">100</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>corrected at 200000</astigmatism>
                  </legacy>
               </alignment_procedure>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">14</sampling_interval>
                     </digitization_details>
                     <number_real_images>37</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                     <od_range>1.2</od_range>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Oxford</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>the holes in the carbon film were covered with
          a       thin-layer       of carbon film.</details>
            <ctf_correction>
               <details>each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C4</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">10.5</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>IMAGIC SPIDER</name>
                  </software>
               </software_list>
               <number_images_used>21379</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>496</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="845">
      <file>emd_1094.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>60</col>
         <row>60</row>
         <sec>60</sec>
      </dimensions>
      <origin>
         <col>-30</col>
         <row>-30</row>
         <sec>-30</sec>
      </origin>
      <spacing>
         <x>60</x>
         <y>60</y>
         <z>60</z>
      </spacing>
      <cell>
         <a units="&#8491;">168</a>
         <b units="&#8491;">168</b>
         <c units="&#8491;">168</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-10.7372</minimum>
         <maximum>8.15827</maximum>
         <average>0.0763837</average>
         <std>1.00394</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.8</x>
         <y units="&#8491;">2.8</y>
         <z units="&#8491;">2.8</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>2.12</level>
         </contour>
      </contour_list>
      <annotation_details>A map of the KvAP/33H1Fab complex at 10.5
      angstrom resolution. A threshold at 1.0 gives 340 kDa.</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1094::::</details>
   </map>
</emd>