2025-10-01 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY database_2 em_admin _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_validate_chiral _chem_comp.formula _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update _pdbx_entry_details.has_protein_modification DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name DERIVED_CALCULATIONS em_admin pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact struct_conn _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBe PDBe 2020-04-15 2020-11-25 2020-11-25 2025-10-01 Grinzato A Albanese P Cryo-EM, photosystem II, High Light, PHOTOSYNTHESIS Grinzato A Albanese P Marotta R Swuec P Saracco G Bolognesi M Zanotti G Pagliano C Int J Mol Sci CH 21 2020 33207833 doi:10.3390/ijms21228643 1422-0067 EMD-10866 other EM volume

stacked PSII-LHCII C2S2 supercomplexes from Pisum sativum grown in high light conditions

EMD-10867 other EM volume

stacked PSII-LHCII C2S2M supercomplexex from Pisum sativum grown in high light conditions

EMD-10868 other EM volume

stacked PSII-LHCII C2S2M2 supercomplexex from Pisum sativum grown in low light conditions

EMD-10887 other EM volume

stacked PSII-LHCII C2S2 supercomplexes with visible stroma connections from Pisum sativum grown in high light conditions

6yp7 FULLOVERLAP EMDB EMD-10865 associated EM volume

PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions

EMDB EMD-10866 other EM volume

stacked PSII-LHCII C2S2 supercomplexes from Pisum sativum grown in high light conditions

EMDB EMD-10867 other EM volume

stacked PSII-LHCII C2S2M supercomplexex from Pisum sativum grown in high light conditions

EMDB EMD-10868 other EM volume

stacked PSII-LHCII C2S2M2 supercomplexex from Pisum sativum grown in low light conditions

EMDB EMD-10887 other EM volume

stacked PSII-LHCII C2S2 supercomplexes with visible stroma connections from Pisum sativum grown in high light conditions

PSII-LHCII C2S2 supercomplex PSII-LHCII C2S2 supercomplex 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 Pisum sativum Chlorophyll a-b binding protein 8, chloroplastic Pisum sativum 0.023573473 6 Pisum sativum LEVO GSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEA FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPG P27490 Photosystem II protein D1 Pisum sativum 0.036972074 2 Pisum sativum LEVO ENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIG LHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEV MHERNAHNFPLDLA P06585 1.10.3.9 Photosystem II CP47 reaction center protein Pisum sativum 0.055659242 2 Pisum sativum LEVO GLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNIT GGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWLYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGL FGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSS IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGHVENQSLSEAWSKIPEKLAFYDYIGNNPAK GGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRGDVPFRRAESKYSVEQVGVIVEF YGGELNGVTYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDLFAG IDPDLDAQVEFGAFQKLGDPTTR Q9XQR6 Photosystem II CP43 reaction center protein Pisum sativum 0.049275371 2 Pisum sativum LEVO TGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGG EVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGSFLLVFKAFYFG GIYDTWAPGGGDVRKITNFTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRA LVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMR SPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPR SWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN P06004 Photosystem II D2 protein Pisum sativum 0.038220602 2 Pisum sativum LEVO NDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLL LWGPEAQGDLTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAP SFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANR FWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAT QDQPHENLIFPEEVLPRGNAL P06006 1.10.3.9 Cytochrome b559 subunit alpha Pisum sativum 0.008624707 2 Pisum sativum LEVO RSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTETRQGIPLITGRFDSLEQLDEFSRS P13554 Cytochrome b559 subunit beta Pisum sativum 0.0033960349999999995 2 Pisum sativum LEVO FTVRWLAVHGLAVPTVFFLGSISAMQFIQR P62096 Photosystem II reaction center protein H Pisum sativum 0.0064556069999999995 2 Pisum sativum LEVO GPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGIAMALFAVFLSIILEIYNSSLLLDQISM Q9XQR3 Photosystem II reaction center protein I Pisum sativum 0.0039266909999999995 2 Pisum sativum LEVO MLTLKLFVYTIVIFFVSLFIFGFLSNDPGRNPGR D5MAJ9 Photosystem II reaction center protein J Pisum sativum 0.003598264 2 Pisum sativum LEVO GRIPLWIIGTVAGIVVIGLIGLFFYGSYSGLGSSL P13555 Photosystem II reaction center protein K Pisum sativum 0.004287155 2 Pisum sativum LEVO KLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVSFR D5MAJ8 Photosystem II reaction center protein L Pisum sativum 0.0043669040000000004 2 Pisum sativum LEVO TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN P60147 Photosystem II reaction center protein M Pisum sativum 0.0036414250000000002 2 Pisum sativum LEVO MEVNILAFIATALFILVPTAFLLIIYVKTVSQS P69529 Oxygen-evolving enhancer protein 1, chloroplastic Pisum sativum 0.026554645999999998 2 Pisum sativum LEVO EGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMT RLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPK GRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQG VWYAQLES P14226 Photosystem II reaction center protein T Pisum sativum 0.003692472 2 Pisum sativum LEVO MEALVYTFLLVSTLGIIFFAIFFREPPKVPTK Q8HS25 Photosystem II reaction center protein W Pisum sativum 0.005914628999999999 2 Pisum sativum LEVO LVDDRMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASGLDEDEESGLSL A0A2D0TCJ2 Ultraviolet-B-repressible protein Pisum sativum 0.003929627 2 Pisum sativum LEVO ATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKR Q8VYY1 Photosystem II reaction center protein Z Pisum sativum 0.006555742 2 Pisum sativum LEVO MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS Q32902 Light harvesting chlorophyll a/b-binding protein Lhcb4.3 Pisum sativum 0.024460892999999997 2 Pisum sativum LEVO GLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQPYSEVFGIE RFRECELIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGASYFGFSLPFSLTALIWIEVLVIGYIEFQRNAELDPEK RLYPGGKFFDPLGLANDPEEKERLQLAEIKHSRLAMVVFLVFAIQAAVSGKGPIGFIATFNQ Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26 Pisum sativum 0.023839139 2 Pisum sativum LEVO ANEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYELIHARWAMLGAAGFIIPEAF NKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEVVLLGGAEYYRITNGLDLEDKFHPGGPFDPLGLAND PDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENFAKHLSDPFGNNLLTVIAG CHLOROPHYLL B 0.000907472 48 CHL CHLOROPHYLL A 0.000893489 150 CLA (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.000568871 12 LUT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.00060087 8 XAT (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL 0.00060087 7 NEX 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 26 LHG CA-MN4-O5 CLUSTER 0.00033982699999999996 2 OEX FE (II) ION 5.5845e-05 2 FE2 CHLORIDE ION 3.5453e-05 4 CL PHEOPHYTIN A 0.0008712 4 PHO BETA-CAROTENE 0.000536873 22 BCR 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 0.000749201 4 PL9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 8 SQD BICARBONATE ION 6.1017e-05 2 BCT DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 10 DGD 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 14 LMG PROTOPORPHYRIN IX CONTAINING FE 0.000616487 2 HEM singleParticle particle 7.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 BASE (4k x 4k) 40.0 GATAN K2 BASE (4k x 4k) 40.0 1 NONE 5XNL C2 3.8 FSC 0.143 CUT-OFF 27942 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD