2024-05-22 REL PDBe PDBe PDBe 2020-04-07 2020-07-29 2020-07-29 2024-05-22 Rix1-Rea1 pre-60S particle - Rix1-subcomplex, body 3 (rigid body refinement) Kater L Beckmann R pre-60S, Biogenesis, LSU, Large subunit, ribosome assembly, RIBOSOME Kater L Mitterer V Thoms M Cheng J Berninghausen O Beckmann R Hurt E Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis. Mol.Cell US 79 615 628.e5 2020 32668200 doi:10.1016/j.molcel.2020.06.032 1097-2765 2168 MOCEFL 6yle FULLOVERLAP Rix1-Rea1 pre-60S assembly particle - Rix1-subcomplex Rix1-Rea1 pre-60S assembly particle - Rix1-subcomplex 0 1 2 3
Rix1-TAP Flag-Rea1 derived pre-60S assembly complex
Saccharomyces cerevisiae Pre-rRNA-processing protein IPI3 Saccharomyces cerevisiae 0.061836695 2 LEVO MDEQVIFTTNTSGTIASVHSFEQINLRQCSTQSRNSCVQVGNKYLFIAQAQKALINVYNLSGSFKRESVEQRLPLPEILK CLEVVENDGVQYDRIQGVNHNLPDFNLPYLLLGSTESGKLYIWELNSGILLNVKPMAHYQSITKIKSILNGKYIITSGND SRVIIWQTVDLVSASNDDPKPLCILHDHTLPVTDFQVSSSQGKFLSCTDTKLFTVSQDATIRCYDLSLIGSKKKQKANEN DVSIGKTPVLLATFTTPYSIKSIVLDPADRACYIGTAEGCFSLNLFYKLKGNAIVNLLQSAGVNTVQKGRVFSLVQRNSL TGGENEDLDALYAMGQLVCENVLNSNVSCLEISMDGTLLLIGDTEGKVSIAEIYSKQIIRTIQTLTTSQDSVGEVTNLLT NPYRLERGNLLFEGESKGKQPSNNNGHNFMKIPNLQRVIFDGKNKGHLHDIWYQIGEPEAETDPNLALPLNDFNAYLEQV KTQESIFSHIGKVSSNVKVIDNKIDATSSLDSNAAKDEEITELKTNIEALTHAYKELRDMHEKLYEEHQQMLDKQ P53877 Pre-rRNA-processing protein RIX1 Saccharomyces cerevisiae 0.086839844 2 LEVO MSEEFIAVSTLARNLEIAKGNEFHTILATLRSPVYINEQLLKSELSFLVTKILKLIRSGNDFDLWKGCHTSVVTCAYNPL VLSTHGGQLLAAIYSRLEQKTGFYSSVISSSHGKQLFNTLISSVAIIIDLMKNKPTLSREALVPKLKAIIPTLITLSQYE PELVLPVLQRILKRNTTTFKPFTNKFRTVLINLIISDYASLGTKTQRLVCENFAYLHLLKIQVSDTSDDETQAHHKIYAD SNWRTGLMSILSQFKPIIQLCGEILDFEQDNELYKLIKSLPVIDESNNKEEFLPSLKLDFNAPLTLWEIPQRLSLLADML VAFISLPTPFPIRVPLGGINSLCEVLLGVSNKYLPLKKELRHDNELNGVINTILPQIQFQGIRLWEIMVSKYGKCGLSFF EGILSSIELFIPLKKKSNNEIDFNVVGSLKFEFATVFRLVNMILSHLGHQLNIISVISQLIEVALFLSHDKTLIDSLFKN RKSIMKQQTKTKQSKRSKSAEGAFSDIYTHPELFVCKNSMNWFNEINDFFITALNNWILPSTPHIQILKYSITQSLRLKE RFGYIPESFVNLLRCEVLHPGSERVSILPIAISLLKNINDDMFELLCHPKVPVGMVYQLHKPLDLGEDGEVRDDINKKEV ETNESSSNANTGLETLKALENLENVTIPEPKHEVPKVVDDTAIFKKRSVEEVIERESTSSHKKVKFVEETTVDNGEELIV KKAVSQTKEEEKPMEDSEDEEQEEFEIPAIELSDDEEEEEEEE P38883 Pre-rRNA-processing protein IPI1 Saccharomyces cerevisiae 0.037928895 1 LEVO MTKSRKQKQKKQDFLRKKLKVGKPKEKARNATDTSFVSKTISIRNQHLDQNPHDLTKRLTLLKHHNINVRKETLTTFQKS IPSIIKSRLMTPLLTQSIPLICDESQQVRQGLIDLVDEIGSHDAEILKLHCNIFVLYINMAMTHIVTQIQADSTKFLSHL LKYCGDEVVRKSWVKLLNGVFGVLGWGQVGKNDSASIVQTKKRNAKYVTIHLNALYTLVEYGCQDERARSDGDTAETTED SGTLRNPYLIPDYPQPFEHLKLFTRELKVQDATSSGVNATLLSLATQDIDTRKAVFIEQFLPIVRKKIEVIIKEGGECGK SANKLKTLLAKIFD A6ZSZ4 singleParticle particle 7.5 Quantifoil R3/3 COPPER 300 CARBON CONTINUOUS GLOW DISCHARGE AIR ETHANE FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 QUANTUM (4k x 4k) INTEGRATING 3838 3710 1-48 1 10.0 75.0 1 273799 EMD-3199 C1 FOURIER SPACE 3.3 FSC 0.143 CUT-OFF RELION 3.0.8 114398 MAXIMUM LIKELIHOOD RELION 3.0.8 MAXIMUM LIKELIHOOD RELION 3.0.8 RELION 3.0.8 emd_10836.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 211.8 211.8 211.8 90.0 90.0 90.0 X Y Z -0.037551817 0.072617956 0.00043897267 0.0037487403 1.059 1.059 1.059 0.025 AUTHOR Rix1-subcomplex of the Rix1-Rea1 pre-60S particle AB INITIO MODEL emd_10836_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 211.8 211.8 211.8 90.0 90.0 90.0 X Y Z -0.021837821 0.046370927 0.0025540923 0.0053468184 1.059 1.059 1.059 AUTHOR Relion half map (unfiltered, unmasked) emd_10836_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 211.8 211.8 211.8 90.0 90.0 90.0 X Y Z -0.020117175 0.045865074 0.0025433132 0.0053448593 1.059 1.059 1.059 AUTHOR Relion half map (unfiltered, unmasked)