Plant PSI-ferredoxin-plastocyanin supercomplex

2024-10-09 REL PDBe PDBe PDBe 2020-03-25 2020-09-30 2020-09-30 2024-10-09 Israel Science Foundation 569/17 Israel German-Israeli Foundation for Research and Development 1483 Israel Plant PSI-ferredoxin-plastocyanin supercomplex Caspy I Nelson N Membrane complex, photosystem I, ferredoxin, light harvesting, excitation transfer, PHOTOSYNTHESIS Caspy I Borovikova-Sheinker A Klaiman D Shkolnisky Y Nelson N The structure of a triple complex of plant photosystem I with ferredoxin and plastocyanin. Nat.Plants UK 6 1300 1305 2020 33020607 doi:10.1038/s41477-020-00779-9 2055-0278 6yez FULLOVERLAP Triple complex of photosystem I bound to ferredoxin and plastocyanin Triple complex of photosystem I bound to ferredoxin and plastocyanin 0 1 2 3 4 5 6 7 9 10 11 13 14 16 18 Pisum sativum BCC 0.66 Photosystem I P700 chlorophyll a apoprotein A1 Pisum sativum 0.08257148399999999 1 LEVO PEVKILVDRDPIKTSFEQWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSG MYFHGARFSNYEAWLNDPTHIRPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFA ALMLFAGWFHYHKAAPKLVWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEFILNRDLL AQLYPSFAEGATPFFTLNWSKYADFLTFRGGLDPLTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHK GPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAA IFMVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQNT HALAPGTTAPGATTSTSLTWGGGDLVSVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANL GFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSINDQGVVTHITGGNFAQSSITINGWLRD FLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGV THYLLGGIATTWAFFLARIIAVG A0A0F6NFW5 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Pisum sativum 0.082381734 1 LEVO ALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEGRLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDP LHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGAIFLLFLSFISLLAGWLHLQPKW KPSVSWFKNAESRLNHHLSGLFGVSSLAWAGHLVHVAIPGSRGEYVRWNNFLSVLPHPQGLGPLFTGQWNLYAQNPDSSN HLFSTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIGGHMYRTNFGIGHSIKYILEAHIPPGGRLGRGHKG LYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPE QNADNVLARMLEHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSST NSPALNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDG PGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMN SLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLVHFSVGYIFTY AAFLIASTSGKFG A0A0F6NGI2 1.97.1.12 Photosystem I iron-sulfur center Pisum sativum 0.008860276 1 LEVO SHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY P10793 1.97.1.12 PsaD Pisum sativum 0.016041408 1 LEVO GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSK YKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGVNFRSIGKNVSPIEVKFTGKQPYDL PsaE Pisum sativum 0.0074794219999999995 1 LEVO PPIGPKRGAKVKILRQESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK PsaF Pisum sativum 0.017137857 1 LEVO DIAGLTPCKDSKQFAKREKQSIKKLESSLKLYAPDSAPALAINATIEKTKRRFDNYGKQGLLCGADGLPHLIVSGDQRHW GEFITPGILFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIIDVPLATGLVFRGFSWPIAAYRELLNGELVAKDV PsaG Pisum sativum 0.010678027 1 LEVO LNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI VAYYILATSSNGYDPKF PsaH Pisum sativum 0.010043313 1 LEVO YGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKK GPQLPPQLGPRLG Photosystem I reaction center subunit VIII Pisum sativum 0.0034091979999999996 1 LEVO INLPSLFVPLVGLLFPAVAMASLFLHVEKRL P17227 PsaJ Pisum sativum 0.004767609 1 LEVO MRDLKTYLSVAPVASTLWFAALAGLLIEINRFFPDALTFPFF Photosystem I reaction center subunit X psaK Pisum sativum 0.008135471 1 LEVO FIGSPTNLIMVTSTSLMLFAGRFGLAPSANRKATAGLKLEARDSGLQTGDPAGFTLADTLACGVVGHIIGVGVVLGLKNI G E1C9L3 PsaL Pisum sativum 0.01686327 1 LEVO YQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFLLVGPFVKAGPLRNTEIAGQAGSLA AGGLVVILSICLTIYGISSFNEGDPSTAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAFFLLYVLDLPYF Lhca1 Pisum sativum 0.021335438999999998 1 LEVO DWMPGQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQA TYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIC VQQSAYPGTGPLENLATHLADPWHNTIGNVLIP Chlorophyll a-b binding protein, chloroplastic Pisum sativum 0.022845812 1 LEVO TVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSW YTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKEL RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAA Q41038 Chlorophyll a-b binding protein 3, chloroplastic Pisum sativum 0.024139521 1 LEVO RPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETAL AWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG KDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH Q32904 Chlorophyll a-b binding protein P4, chloroplastic Pisum sativum 0.021994029 1 LEVO KKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGK EEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLA MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL Q9SQL2 Ferredoxin-1, chloroplastic Pisum sativum 0.010359311999999999 1 LEVO ASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAY PTSDVVIETHKEEDLTA P09911 Plastocyanin, chloroplastic Pisum sativum 0.010353486999999998 1 LEVO VEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVKLDAKGTY KFYCSPHQGAGMVGQVTVN P16002 CHLOROPHYLL A ISOMER 0.000893489 1 CL0 CHLOROPHYLL A 0.000893489 141 CLA PHYLLOQUINONE 0.000450696 2 PQN BETA-CAROTENE 0.000536873 27 BCR 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 8 LHG DODECYL-BETA-D-MALTOSIDE 0.000510615 6 LMT IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 19 LMG CALCIUM ION 4.0078e-05 2 CA DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 7 DGD (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.000568871 7 LUT CHLOROPHYLL B 0.000907472 15 CHL (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.00060087 2 XAT 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 0.000704998 1 3PH (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol 0.000568871 1 C7Z FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 1 FES COPPER (II) ION 6.354599999999999e-05 1 CU water 1.8015e-05 2 HOH singleParticle particle 7.0 Quantifoil R1.2/1.3 COPPER 300 ETHANE 100 277 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.8 0.8 2.0 2.0 105000.0 GATAN K3 BIOQUANTUM (6k x 4k) 11622 1.4 47.05 1 5L8R C1 2.7 FSC 0.143 CUT-OFF RELION 3.0.7 102216 ANGULAR RECONSTITUTION RELION 3.0.7 ANGULAR RECONSTITUTION RELION 3.0.7 RELION 3.0.7 emd_10798.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 246.6 246.6 246.6 90.0 90.0 90.0 X Y Z -0.04739425 0.18425773 0.0008239849 0.0064588417 0.822 0.822 0.822 0.022 AUTHOR ::::EMDATABANK.org::::EMD-10798:::: 5L8R PDB experimental model RIGID BODY FIT REAL emd_10798_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 246.6 246.6 246.6 90.0 90.0 90.0 X Y Z -0.028307272 0.14449531 0.00087566656 0.005094119 0.822 0.822 0.822 AUTHOR ::::EMDATABANK.org::::EMD-10798:::: emd_10798_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 246.6 246.6 246.6 90.0 90.0 90.0 X Y Z -0.028336035 0.14155953 0.00077230326 0.0050961766 0.822 0.822 0.822 AUTHOR ::::EMDATABANK.org::::EMD-10798::::