2021-04-14 REL PDBe PDBe PDBe 2020-03-15 2020-08-05 2020-08-05 2021-04-14 European Research Council (ERC) FP7 GA ERC-2012-387 SyG_318987-ToPAG Germany German Research Foundation (DFG) GSC-1006 Germany German Research Foundation (DFG) EXC 2067/1- 390729940 Germany Cryo-electron tomogram and segmentation of the cortical ER in yeast, used for testing surface extraction algorithms. Collado JF Salfer M Salfer M Collado JF Baumeister W Fernandez-Busnadiego R Martinez-Sanchez A Reliable estimation of membrane curvature for cryo-electron tomography. Plos Comput.Biol. US 16 e1007962 e1007962 2020 32776920 doi:10.1371/journal.pcbi.1007962 1553-7358 EMD-10767 associated EM volume Saccharomyces cerevisiae strain ANDY129 deltaScs2 deltaScs22 deltaIst2. Saccharomyces cerevisiae strain ANDY129 deltaScs2 deltaScs22 deltaIst2. 0 Saccharomyces cerevisiae ER, plasma membrane Saccharomyces cerevisiae ANDY129 tomography cell 6.0 ETHANE OTHER OTHER 30 0.03 4000 93 1000 200
The value given for _emd_sectioning_focused_ion_beam.instrument is Quanta 3D Cryo-FIB / SEM. This is not in a list of allowed values {'DB235', 'OTHER'} so OTHER is written into the XML file.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.1 2.7 5.0 5.0 42000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 80.0 90.0 GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 1.6 1.7 1 BACK PROJECTION IMOD 43 emd_10767.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 928 928 196 0 98 0 928 928 196 12695.04 12695.04 2681.28 90.0 90.0 90.0 X Y Z -204.81978 186.58344 4.100616 18.328278 13.68 13.68 13.68 AUTHOR Raw tomogram. emd_10767_msk_1.map emd_10767_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 421 341 120 0 0 0 421 341 120 5759.2803 4664.88 1641.6001 90.0 90.0 90.0 X Y Z -87.87292 90.43987 4.1409173 13.415353 13.68 13.679999 13.680001 AUTHOR Filtered subset of the tomogram using TOMOEED, an anisotropic nonlenear diffusion filter (Fernandez, Lucic 2011).