<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_9_3/emdb.xsd" version="3.0.9.3" emdb_id="EMD-10625">
    <admin>
        <current_status>
            <date>2024-12-04</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2020-01-18</deposition>
            <header_release>2021-01-27</header_release>
            <map_release>2021-01-27</map_release>
            <update>2024-12-04</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Israel Science Foundation</funding_body>
                <code>386/18</code>
                <country>Israel</country>
            </grant_reference>
        </grant_support>
        <title>Cin8 motor domain (short loop 8) bound to microtubules</title>
        <authors_list>
            <author>Siegler N</author>
            <author>Singh SK</author>
            <author>Zalk R</author>
            <author>Debs GE</author>
            <author>Sindelar CV</author>
            <author>Gheber L</author>
            <author>Zarivach R</author>
        </authors_list>
        <keywords>Kinesin, Cin8, Motor domain, Microtubules, MOTOR PROTEIN</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0002-1958-6043" order="1">Singh SK</author>
                    <author ORCID="0000-0001-8260-8383" order="2">Siegler N</author>
                    <author ORCID="0000-0002-0629-7525" order="3">Pandey H</author>
                    <author ORCID="0000-0002-5643-0849" order="4">Yanir N</author>
                    <author ORCID="0009-0001-9942-5089" order="5">Popov M</author>
                    <author ORCID="0000-0002-1819-4419" order="6">Goldstein-Levitin A</author>
                    <author ORCID="0000-0003-3602-0436" order="7">Sadan M</author>
                    <author ORCID="0000-0002-5629-0380" order="8">Debs G</author>
                    <author ORCID="0000-0001-6543-0296" order="9">Zarivach R</author>
                    <author ORCID="0000-0001-8379-5133" order="10">Frank GA</author>
                    <author ORCID="0000-0002-5368-937X" order="11">Kass I</author>
                    <author ORCID="0000-0002-6646-7776" order="12">Sindelar CV</author>
                    <author ORCID="0000-0003-4251-6497" order="13">Zalk R</author>
                    <author ORCID="0000-0003-3759-4001" order="14">Gheber L</author>
                    <title>Noncanonical interaction with microtubules via the N-terminal nonmotor domain is critical for the functions of a bidirectional kinesin.</title>
                    <journal_abbreviation>Sci Adv</journal_abbreviation>
                    <country>US</country>
                    <volume>10</volume>
                    <first_page>eadi1367</first_page>
                    <last_page>eadi1367</last_page>
                    <year>2024</year>
                    <external_references type="PUBMED">38324691</external_references>
                    <external_references type="DOI">doi:10.1126/sciadv.adi1367</external_references>
                    <external_references type="ISSN">2375-2548</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>ALPHA and Beta TUBULIN WITH CIN8 MOTOR DOMAIN</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>ALPHA and Beta TUBULIN WITH CIN8 MOTOR DOMAIN</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>ADDED 0.1 mM AMP-PNP, 10 micromolar Taxol</details>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Cin8, microtubules</name>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MPAENQNTGQDRSSNSISKNGNSQVGCHTVPNEELNITVAVRCRGRNEREISMKSSVVVNVPDITGSKEISINTTGDTGITAQMNAKRYTVDKVFGPGASQDLIFDEVAGPLFQDFIKGYNCTVLVYGMTSTGKTYTMTGDEKLYNGELSDAAGIIPRVLLKLFDTLELQQNDYVVKCSFIELYNEELKDLLDSNSNGSSNTGFDGQFMKKLRIFDNNNNNSSIYIQNLQEFHITNAMEGLNLLQKGLKHRQVASTKMNDFSSRSHTIFTITLYKKHQDELFRISKMNLVDLAGSENINRSGALNQRAKEAGSINQSLLTLGRVINALVDKSGHIPFRESKLTRLLQDSLGGNTKTALIATISPAKVTSEETCSTLEYASKAKNIKNKPQLGSFIMKDILLEHHHHHH
</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>6.9</ph>
                    </buffer>
                    <grid>
                        <model>Quantifoil R1.2/1.3</model>
                        <material>COPPER</material>
                        <mesh>300</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <instrument>HOMEMADE PLUNGER</instrument>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI POLARA 300</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.3</nominal_cs>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 QUANTUM (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <digitization_details/>
                            <average_electron_dose_per_image units="e/Å^2">80.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="Å">82.18</delta_z>
                            <delta_phi units="deg">-0.53</delta_phi>
                            <axial_symmetry>C14</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">6.1</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>47551</number_images_used>
                </final_reconstruction>
                <segment_selection>
                    <number_selected>47551</number_selected>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                    <details>Number of particles seleced for reconstruction</details>
                </segment_selection>
                <startup_model type_of_model="INSILICO MODEL"/>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="61012">
        <file>emd_10625.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>248</col>
            <row>248</row>
            <sec>248</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>248</x>
            <y>248</y>
            <z>248</z>
        </spacing>
        <cell>
            <a units="Å">272.80002</a>
            <b units="Å">272.80002</b>
            <c units="Å">272.80002</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.081666864</minimum>
            <maximum>0.29207584</maximum>
            <average>-0.008126179</average>
            <std>0.013407394</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.1</x>
            <y units="Å">1.1</y>
            <z units="Å">1.1</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.08</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-10625::::</label>
        <annotation_details>Cin8 motor domain (short loop 8) bound to microtubules</annotation_details>
    </map>
</emd>
