<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_0/emdb.xsd" emdb_id="EMD-10131" version="3.0.2.0">
    <admin>
        <current_status>
            <date>2020-11-25</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2019-07-18</deposition>
            <header_release>2019-10-23</header_release>
            <map_release>2019-10-23</map_release>
            <update>2020-11-25</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Medical Research Council (United Kingdom)</funding_body>
                <code>MR/R000352/1</code>
                <country>United Kingdom</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Wellcome Trust</funding_body>
                <code>079605/Z/06/Z</code>
                <country>United Kingdom</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Medical Research Council (United Kingdom)</funding_body>
                <code>MR/J003867/1</code>
                <country>United Kingdom</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Biotechnology and Biological Sciences Research Council</funding_body>
                <code>BB/L014211/1</code>
                <country>United Kingdom</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Wellcome Trust</funding_body>
                <code>101488/Z/13/Z</code>
                <country>United Kingdom</country>
            </grant_reference>
        </grant_support>
        <title>MKLP2-decocrated 13 protofilament microtubule (ADP.Al.Fx state) processed with MiRP (Microtubule Relion-based Pipeline)</title>
        <authors_list>
            <author>Cook AC</author>
            <author>Manka SW</author>
            <author>Wang S</author>
            <author>Moores CA</author>
            <author>Atherton J</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Cook AD</author>
                    <author order="2">Manka SW</author>
                    <author order="3">Wang S</author>
                    <author order="4">Moores CA</author>
                    <author order="5">Atherton J</author>
                    <title>A microtubule RELION-based pipeline for cryo-EM image processing.</title>
                    <journal_abbreviation>J.Struct.Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>209</volume>
                    <first_page>107402</first_page>
                    <last_page>107402</last_page>
                    <year>2020</year>
                    <external_references type="PUBMED">31610239</external_references>
                    <external_references type="DOI">doi:10.1016/j.jsb.2019.10.004</external_references>
                    <external_references type="ISSN">1095-8657</external_references>
                    <external_references type="CSD">0803</external_references>
                    <external_references type="ASTM">JSBIEM</external_references>
                </journal_citation>
            </primary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author order="6">Atherton J</author>
                    <author order="7">Yu IM</author>
                    <author order="8">Cook A</author>
                    <author order="9">Muretta JM</author>
                    <author order="10">Joseph A</author>
                    <author order="11">Major J</author>
                    <author order="12">Sourigues Y</author>
                    <author order="13">Clause J</author>
                    <author order="14">Topf M</author>
                    <author order="15">Rosenfeld SS</author>
                    <author order="16">Houdusse A</author>
                    <author order="17">Moores CA</author>
                    <title>The divergent mitotic kinesin MKLP2 exhibits atypical structure and mechanochemistry.</title>
                    <journal_abbreviation>Elife</journal_abbreviation>
                    <country>US</country>
                    <external_references type="PUBMED">28826477</external_references>
                    <external_references type="ISSN">2050-084X</external_references>
                </journal_citation>
            </secondary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-3622</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Data originally processed with Spider and Frealign</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-10131</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Complex of 13pf microtubule with bound MKLP2 motor domain in the presence of ADP.AlFx</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Complex of 13pf microtubule with bound MKLP2 motor domain in the presence of ADP.AlFx</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>Microtubule bound to taxol</details>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="2">
                <name>Tubulin alpha and beta chains</name>
                <parent>1</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>Microtubule bound to taxol</details>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="3">
                <name>Kinesin-like protein KIF20A</name>
                <parent>1</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>Microtubule bound to taxol</details>
                <natural_source database="NCBI">
                    <organism ncbi="10090">Mus musculus</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>6.8</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <details></details>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI POLARA 300</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>DIRECT ELECTRON DE-20 (5k x 3k)</film_or_detector_model>
                            <detector_mode>INTEGRATING</detector_mode>
                            <average_electron_dose_per_image units="e/Å^2">25.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>Gctf</name>
                        </software>
                    </software_list>
                    <details>RELION</details>
                </ctf_correction>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">4.2</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                    <details>Following the MiRP pipeline</details>
                    <number_images_used>14411</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                    <details>Following the MiRP pipeline</details>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                    <details>Following the MiRP pipeline</details>
                </final_angle_assignment>
                <final_three_d_classification>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                    <details>Following the MiRP pipeline</details>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="3593">
        <file>emd_10131.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>80</col>
            <row>103</row>
            <sec>109</sec>
        </dimensions>
        <origin>
            <col>192</col>
            <row>83</row>
            <sec>157</sec>
        </origin>
        <spacing>
            <x>80</x>
            <y>103</y>
            <z>109</z>
        </spacing>
        <cell>
            <a units="Å">122.72</a>
            <b units="Å">158.002</b>
            <c units="Å">167.20601</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.15499362</minimum>
            <maximum>0.29427066</maximum>
            <average>0.001958117</average>
            <std>0.01719634</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.534</x>
            <y units="Å">1.534</y>
            <z units="Å">1.534</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.035</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-10131::::</label>
        <annotation_details>MKLP2 (ADPAlFx state) decorated 13PF microtubule: symmetrised asymmetric unit density from MiRP processing</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>5ND4</access_code>
                </initial_model>
            </modelling>
        </modelling_list>
        <additional_map_list>
            <additional_map format="CCP4" size_kbytes="3593">
                <file>emd_10131_additional_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>432</col>
                    <row>432</row>
                    <sec>432</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>432</x>
                    <y>432</y>
                    <z>432</z>
                </spacing>
                <cell>
                    <a units="Å">662.688</a>
                    <b units="Å">662.688</b>
                    <c units="Å">662.688</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-5.131995</minimum>
                    <maximum>10.125138</maximum>
                    <average>0.013429667</average>
                    <std>0.72275335</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.534</x>
                    <y units="Å">1.534</y>
                    <z units="Å">1.534</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-10131::::</label>
                <annotation_details>MKLP2 (ADPAlFx state) decorated 13PF microtubule: C1 whole microtubule density from MiRP processing</annotation_details>
            </additional_map>
        </additional_map_list>
    </interpretation>
</emd>
