Hyperthermophilic respiratory Complex III

2025-09-17 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY COORDINATE_REPLACEMENT AUTHOR Ligand geometry DERIVED_CALCULATIONS atom_site em_software pdbx_struct_assembly_prop pdbx_struct_conn_angle pdbx_validate_close_contact struct_conn struct_site struct_site_gen _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _em_software.category _pdbx_struct_assembly_prop.value _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update _pdbx_entry_details.has_protein_modification EXPERIMENTAL_SUMMARY database_2 em_admin _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update STRUCTURE_SUMMARY em_admin pdbx_modification_feature pdbx_validate_close_contact struct_conn struct_conn_type _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBj PDBj 2019-07-30 2020-05-13 2020-05-13 2025-09-17 Hyperthermophilic respiratory Complex III Fei S Hartmut M Respiratory chain, Complex III, Hyperthermophilic mechanism, OXIDOREDUCTASE Zhu G Zeng H Zhang S Juli J Pang X Hoffmann J Zhang Y Morgner N Zhu Y Peng G Michel H Sun F A 3.3 angstrom -Resolution Structure of Hyperthermophilic Respiratory Complex III Reveals the Mechanism of Its Thermal Stability. Angew.Chem.Int.Ed.Engl. GE 59 343 351 2020 31778296 doi:10.1002/anie.201911554 1521-3773 0179 ACIEAY 6kls FULLOVERLAP EMDB EMD-0716 associated EM volume

The cytochrome bc1 complex (respiratory complex III) The cytochrome bc1 complex (respiratory complex III) 0 1 2 3 Aquifex aeolicus Rieske-I iron sulfur protein Aquifex aeolicus (strain VF5) VF5 0.019429857 2 LEVO MEASRRDFISIGIGALGAVGGLGALYALVRVMLEPSEIAALGAKTEIDVSKIQPMQVRVTSWKGKTLFAIRLPKDFKPEG YTLKKGALNSKGTTNYEILKGHDVFALVGVCTHLGCIPLWKPQGEGGINKPVFHCPCHGGLYTPYGDVIGGPPPRPLFIP PQKLEGNKLIVGVEGFVKELI O66460 cytochrome b subunit Aquifex aeolicus 0.047045629 2 LEVO MGLIEKIVDWIDERAHVREIYRTQMVEYKVAKNLTFPYVFGILALVTFAIQIISGMVLILYYKPSIADAFDSATYSIMGE IPFGWLFRHIHATGANFFMAIVYLHMFTGIYYNAYKRPRELVWIVGWLIYFVLILTALSGYLLPWGQLSYWGFIVTTEIP GSLADAPILKPIFKAIAETIVLWMKGGYVVTDVTLGRVFGSHVLIYPLILLALVGIHLYLVRAAGISNPEGIEYDKKKNP DKFVPFHPYMTLKEGAYVMWYLAVFFFFVFFHISHFLPPENFEPANPLKTPAHIAPEWYLLGYYEVFRSIPSKFWGFVAF NALLLLLLLLPFLDFSPLKSARRRPLFFVMFVIFMISSMALTILGTMPPTPQNAKLGLIFAALVFAFFISLPIISFIEYG WYKAKGGQQE Cytochrome c Aquifex aeolicus (strain VF5) VF5 0.027680169999999997 2 LEVO MNTWGLIKTIFFAGSTLVFFFLLWFYNPFKHVEHYEVDEEVKAIIDNPWKKTESGKTIAEEGRELFIASCSSCHSLRYDG IYIMSVAANPKWKNIEKTSGRPVYRFGTLYKDRFFVPKDVYEAFAHDDIQGLKASLGQVPPDLSSMYLARGEGYLYQFIL NPQKVLPGTTMPQLFNPQFDPQAKEKVAKIVAYMKSVNTPPPKESAKRTVMGVIVIAYFIVMGLLLWKYRENLLKRLGYH O66458 FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES PROTOPORPHYRIN IX CONTAINING FE 0.000616487 4 HEM 2-[(2~{E},6~{E},10~{Z},14~{Z},18~{Z},23~{R})-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18-pentaenyl]naphthalene-1,4-dione 0.000639004 6 DLX (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE 0.0007490069999999999 3 PGV HEME C 0.0006185030000000001 2 HEC singleParticle particle 1.5 7.4 ETHANE FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 60.0 1 NONE 3.3 FSC 0.143 CUT-OFF 93622 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_0716.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 268.8 268.8 268.8 90.0 90.0 90.0 X Y Z -0.19752192 0.28257877 0.00052158366 0.006599499 1.05 1.05 1.05 0.055 AUTHOR ::::EMDATABANK.org::::EMD-0716:::: emd_0716_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 268.8 268.8 268.8 90.0 90.0 90.0 X Y Z -0.19752192 0.28257877 0.00052158366 0.006599499 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-0716:::: emd_0716_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 268.8 268.8 268.8 90.0 90.0 90.0 X Y Z -0.19752192 0.28257877 0.00052158366 0.006599499 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-0716::::