2024-10-16
REL
RCSB
RCSB
RCSB
2018-12-11
2019-01-30
2019-01-30
2024-10-16
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
AI011219
United States
Near-atomic structure of icosahedrally averaged PBCV-1 capsid
Fang Q
Rossmann MG
tape-measure protein, minor capsid proteins, zip protein, giant virus, VIRUS
Fang Q
Zhu D
Agarkova I
Adhikari J
Klose T
Liu Y
Chen Z
Sun Y
Gross ML
Van Etten JL
Zhang X
Rossmann MG
Near-atomic structure of a giant virus.
Nat Commun
UK
10
388
388
2019
30674888
doi:10.1038/s41467-019-08319-6
2041-1723
6ncl
FULLOVERLAP
Paramecium bursaria Chlorella virus 1
Paramecium bursaria Chlorella virus 1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Paramecium bursaria Chlorella virus 1
VIRION
OTHER
false
false
P14
Paramecium bursaria Chlorella virus 1
0.038502719
1
LEVO
MQTPSIIQCGLLNSFARKMTDAISDNQIIATSRFFNIARDVADVVVSNTKLAQQYEQLSIDSLKEYLVSVAKFVAVDYSN
TTSADVDDLIHKLRLFIEEECYQYNIDKEETCDGDVCVSDEYNEPAPKPKPKPKPKPAPKPKPAPKPKPAPKPAPKPAPK
PAPKPAPKPAPKPAPKPAPEPAPEPAPEPAPKPAPEPAPEPAPIRPARRCDENPSNLETCCTNKALYGDFTDSSCDIVKK
KTNWWLWGGIAILVIVLMIGGYFIYKRYFSAPKFENTGEFVNDMNFNNDVNFNNDVNFDNDMNYGNEGIDVSDLEILNLP
VPSVSPVPSASIVPSVSPIPRGSPVPSASPIK
Q98550
P9
Paramecium bursaria Chlorella virus 1
0.023407564
1
LEVO
MKTETLYQDPVWFQDLSVIFKRPSEIIPTRDQSDSERINAMVRLVLYCSFAVALIRQNYLYAILGLAIIAIISLAYALGA
KKTKSNEAYGNIRPYSVKRSKKSCSKSSANNPFSNATVGALLDNEARPPACSYDDNDMASTMRKNFNKGLFRNLDDVYEV
ENSQRQFYTMPVTTAAPDLTAFGQFLYGSKGKTCKEDPSACTPAFATRDG
Q98459
P10
Paramecium bursaria Chlorella virus 1
0.031223599999999997
2
LEVO
MMNFILVLLIVAMIGTILVSESKYLFSKPVCKNCGVKAVTLPVDISAGKLAKVAEAVKKQTEEIKTLLKQKQSAPKAPEL
TNPIEHIKASTTVVSGANGLENVIDEDLPFSDFKGVPVAETTVEGMIKGIRPPTYADPRVMNPALAAAPVQFSDPTQFGT
FGVTDDVSPAFSTEDKIPKTNAKISSDISVEGYENSYDANGARLVMDGKVVKSECQLPSYQIRNSKHHTQLPMRSLNEPP
PMVEDLVDESLFEGLQGYPVDEKLDLLTPPGTATPSSEWAAINYGLTNN
Q98505
P7
Paramecium bursaria Chlorella virus 1
0.029505854999999998
1
LEVO
MQIYSEYYEKIGPRKLRLLVKRRLLFASTWLYINNYILLSIIMKLQTKHMILLGFVAVVVVFIIFMLTRKKKEGFSIGNI
FGKVKGAVTGTVGKVVNVVKPQGYKPEFVNRVNFGKFWACPEGTTDWGSEDKQCLVSQYGPMMWRNKGGNEWGWSCPAGS
APNNSDDWNQKCVQGYSMKKLIDGQWRCTDTEIDTGKDWSNSDWFTAQQQCDRGNNKVFTRRMYIDGKWQCPDGTWDTGF
TWSDGENGGKQCKYYP
Q84580
P6
Paramecium bursaria Chlorella virus 1
0.024036729
1
LEVO
MILVGIAVLILLAVFAILYYKQKEKFVVVGKFVEPIPSNPGQDFTLLPMDQTYTFADPVPDTATAFDVVLSRFTDKKAPA
DLLKGATFPEAAPYTDSEVENISKLALSRVKGPDAPVLSFISVEYAAKGVDNKKNTHYDIAFMVYDQVKNFSLKLVLVAV
LDAKNKLWIKKFSSFNSFTPKDKGPKGVENIDETPLAEFIPDFVQFSRLYKDNANV
Q84523
P1
Paramecium bursaria Chlorella virus 1
0.018281664
1
LEVO
MVETTQHFVSIESSNRPDPANTTPANYSIQLPQRYRNIWSAMLVNIALPAVSPPQKYVYLDIDKLNSIDSTSPSGGVNFA
LAKIPLSIAGTGNVFFADTMTSSFPNVPLQNPVATMDKLNIKLKDANGNVLTIPAGNEHSFMIQLTCGDYIPRGGGSTIT
QNGRVLGGTR
Q84626
P12
Paramecium bursaria Chlorella virus 1
0.017715474999999998
1
LEVO
MGNGPPMERAVSSDDILTYYNTFIFFIYFNFTNENIYIIYTIYMKVQNTIVYIVLLLIVVVIIWNFTRKEGWSDYNAPND
FMKIYYSNIVEDKKLAEKYPFFGTGPFTGLRCRKPNNVGCNTTWVSGQLVELTPKLKEQIECKFGIQYVKT
Q84459
P5
Paramecium bursaria Chlorella virus 1
0.016455834
1
LEVO
MDSRLSAAYAIRAARISMIPGGVDGLVINYAEGGEPAWVQYPLKKQKPLPNNLCYTPTLEDIARKREAVIAKYTKQPLET
GTTFTHVLNASHLNEQYTRVKKSALPDKEFPIIETEKYPEPPILWETTIGAPSRLFDRSDGVKYVR
Q98576
P11
Paramecium bursaria Chlorella virus 1
0.023322655999999997
12
LEVO
MDMHMIVKVVAILAVLFLVYKLWESMNKPNASPLKIQNPYEKYMNSAEGGEYDAEDDDIYYPETDAEDDDIYTGETDDMY
DGEDDDIYVQEGDDIEDAEDEPYDDSADMEQDVPKVQQPMMPLLTPSSQLLPKPSPEAADFAQFAPKNLQAQNFLTATQW
IGVNTQGSSLKNANYDLRADPIIPKADVGPWMMSSVDPNIYQKPLFG
Q84666
P2
Paramecium bursaria Chlorella virus 1
0.063888082
1
LEVO
MCNTYYKRVKFNLFLYTNSIEMELLAVASIIGYGLFSSQQGRETRPDRNRYAEALGSGQGLDEDYDVKPTDMVRKYRKKA
EKRWKKAQVPKESGIITPNMRPSEVMPYFTSGKSMNTNTDYKQRKMELFTGGVLDGHSVSGTYKHKVEAANMFGMTPQGR
VTSDGTVGNAPGDTELLKARSVNSHQYNNVLPTEQLRVGPGLGVGPEVAATGGFHQFYRQLPLNINEYKLTQLPGRLVPG
GTTTGGKGEIQQIASVNHNPDALVLNYDDRPPEATPNGAILASTQYGKQPRGYAGLRPYEKNYEGIAEADVSALQARYLD
QTRGRPRTGDGDTEPIINPNGERDGTGSYVTENMCSMTLESQRGLVNRYITPPGVTGVVQQGGEMRPEFVPETTIREQYE
DIYYTGPAGTTVTPTEPMNVVELQPESRHAKRAGQDRAYTPGAGRVNNFAPAAQGAYGLKDHPTYNALQHVVSEPIEQTF
LPAAQGDDDRFGTKSNVNNPWGNPASLQIANNQLAANKFNRDVTNTVNLDYDAGQPMKQQNFQPKAWIPNNTDDMKMLPL
WKRKQLQAQKNKQQRK
Q84656
P4
Paramecium bursaria Chlorella virus 1
0.020637311000000002
4
LEVO
MFSAFRDTASIGFSDTHQDEKTLRFLKKQISQFIKHLKEYYPNNELTKKLVMKYSDVQLLPYTKGATKDTYTSGLFDHTT
GVIKIAPRDGLGNVRDEQSLNKSICHELAHGTRVKYPGESSHSDEWKDAWKTFLKIAADELGWKIEVPCSSVSFYGLTKD
DCENCVWDQDPETCPKTAKLA
O41054
P3
Paramecium bursaria Chlorella virus 1
0.019116687999999996
3
LEVO
MAMKTQRKENVLFQNVKPREIPLVDNPFSTYPYKHVITETQPTQAKNQAIWGLVQMGLSGEAAAMYGDVVVQKTTRACRK
SEGGFKDVNTELWGTSPYLGRGDGEVYNMPASNQLLRGFESSLRGSRVRTQIDDKSFIPYTWQMIDVPLAAAKTSFIAGL
DTRQQLAYGNP
Q98573
P8
Paramecium bursaria Chlorella virus 1
0.019226946999999998
1
LEVO
METIGNFIQNMAFPTENPYKLSGDFGNSTLEPTVTAALRILHESPAPFNTEFFSRKNVDFIQKKLISETKRYTSFDIGPQ
NEDELIMMMAGIYVQDSTFDGNIKAGLRKLNTLVITECLKQILPGVRAYALYVRDASLPFSGGGEEAFKRPELATLKGSK
VLSGFLPLDRNAS
O41126
Major capsid protein
Paramecium bursaria Chlorella virus 1
0.048199624999999996
84
LEVO
MAGGLSQLVAYGAQDVYLTGNPQITFFKTVYRRYTNFAIESIQQTINGSVGFGNKVSTQISRNGDLITDIVVEFVLTKGG
NGGTTYYPAEELLQDVELEIGGQRIDKHYNDWFRTYDALFRMNDDRYNYRRMTDWVNNELVGAQKRFYVPLIFFFNQTPG
LALPLIALQYHEVKLYFTLASQVQGVNYNGSSAIAGAAQPTMSVWVDYIFLDTQERTRFAQLPHEYLIEQLQFTGSETAT
PSATTQASQNIRLNFNHPTKYLAWNFNNPTNYGQYTALANIPGACSGAGTAAATVTTPDYGNTGTYNEQLAVLDSAKIQL
NGQDRFATRKGSYFNKVQPYQSIGGVTPAGVYLYSFALKPAGRQPSGTCNFSRIDNATLSLTYKTCSIDATSPAAVLGNT
ETVTANTATLLTALNIYAKNYNVLRIMSGMGGLAYAN
P30328
P13
Paramecium bursaria Chlorella virus 1
0.01107083
1
LEVO
MHKITPFLIAAVVAVIVLAVWLFKKDNKKETWFSRDLNYGKANSKIWNATVAKGLKGIANENAEIRKMYPYLGYGDFTGA
ICKGPNNQGCTYYANYTR
Q98473
singleParticle
particle
7.8
CARBON
LACEY
unspecified
ETHANE
85
GATAN CRYOPLUNGE 3
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
GATAN K2 SUMMIT (4k x 4k)
SUPER-RESOLUTION
24.4
1
EMD-5378
I
3.5
FSC 0.143 CUT-OFF
13000
PROJECTION MATCHING
MAXIMUM LIKELIHOOD