2024-11-20 REL PDBe PDBe PDBe 2018-08-10 2019-03-20 2019-03-20 2024-11-20 European Research Council 335855 Czech Republic Echovirus 18 empty particle Buchta D Fuzik T echovirus, echovirus 18, empty particle, B-particle, enterovirus, picornavirus, VIRUS Buchta D Fuzik T Hrebik D Levdansky Y Sukenik L Mukhamedova L Moravcova J Vacha R Plevka P Enterovirus particles expel capsid pentamers to enable genome release. Nat Commun UK 10 1138 1138 2019 30850609 doi:10.1038/s41467-019-09132-x 2041-1723 6hbj FULLOVERLAP Echovirus E18 Echovirus E18 0 1 2 3 Echovirus E18 Metcalf Homo sapiens 5.24 Capsid 330.0 1 VIRION STRAIN false true Viral protein 1 Echovirus E18 0.032564445 1 LEVO GDNQDRTVANTQPSGPSNSTEIPALTAVETGHTSQVDPSDTIQTRHVVNFHSRSESTIENFMGRAACVFMDQYKINGEET STDRFAVWTINIREMAQLRRKCEMFTYMRFDIEMTMVITSCQDQGTILDQDMPVLTHQIMYVPPGGPIPAKVDGYEWQTS TNPSVFWTEGNAPPRISIPFISVGNAYSSFYDGWSHFTQDGTYGYTTLNAMGKLYIRHVNRSSPHQITSTIRVYFKPKHI KAWVPRPPRLCPYINKRDVNFVVTEITDSRTSITDTPHPEHSVLATH Q8V635 3.4.22.29 Viral protein 2 Echovirus E18 0.028802328 1 LEVO SPSAEECGYSDRVRSMTLGNSTITTQESANVVVGYGEWPSYLSDREATAEDQPTQPDVATCRFYTLESVQWEKTSPGWWW KFPEALKNMGLFGQNMHYHYLGRAGYTIHVQCNASKFHQGCLLVVCVPEAEMGCADTDTTFPATELTTEDTPHVFTSDSI TGKKVQAAVCNAGMGVGVGNLTIFPHQWINLRTNNSATIVIPYINSVPMDNMFRHYNFTLMIIPFAPLNFTDGATAYVPI TVTIAPMYAEYNGLRLASTQ Q8V635 3.4.22.29 Viral protein 3 Echovirus E18 0.026143782999999997 1 LEVO GVPVLNTPGSNQFLTSDDYQSPSAMPQFDETPEMHIPGEVRNLMEIAEVDSVVPVNNVTGKTKSMDAYQIPVGTGNTDKT KPIFSFQMDPGYSSVLKRTLLGEMLNYYAHWSGSVKLTFLFCGSAMATGKLLISYSPPGASVPTSRKDAMLGTHIVWDIG LQSSCVLCVPWISQSHYRMVQQDPYTSAGYITCWYQTNIVVPPGAPTSCDVLCFASACNDFSVRLLRDTPFMAQPGKLQ Q8V635 3.4.22.29 singleParticle particle 3.0 5.8 10.0 Na2HPO4 sodium phosphate dibasic 1.8 KH2PO4 monobasic potassium phosphate 137.0 NaCl sodium chloride 2.7 KCl potassium chloride Quantifoil R2/1 COPPER 300 FORMVAR HOLEY GLOW DISCHARGE OTHER ETHANE 100 298 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.0 0.357 3.0 3.8160000000000003 75000.0 79725.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON II (4k x 4k) INTEGRATING 4096 4096 3 16784 1.0 48.0 1 472267 6HBH
Echovirus 18 A-particle
 1 I BACK PROJECTION 3.16 FSC 0.143 CUT-OFF RELION 2.1 8511 MAXIMUM LIKELIHOOD RELION 2.1 MAXIMUM LIKELIHOOD RELION 2.1 2 6241.0 RELION 2.1 emd_0183.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 -175 -175 -175 350 350 350 372.05 372.05 372.05 90.0 90.0 90.0 X Y Z -0.36768115 0.6925562 0.005743135 0.047577202 1.063 1.063 1.063 0.17 AUTHOR Echovirus 18 empty particle FLEXIBLE FIT
Reciprocal space refinement of atom positions and group B-factors
R-factors RECIPROCAL 117.890000000000001 emd_0183_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 544.256 544.256 544.256 90.0 90.0 90.0 X Y Z -0.013869643 0.05593076 0.00063531817 0.0052976063 1.063 1.063 1.063 AUTHOR Echovirus 18 empty particle half-map emd_0183_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 544.256 544.256 544.256 90.0 90.0 90.0 X Y Z -0.0104480665 0.055709593 0.00082475 0.005311704 1.063 1.063 1.063 AUTHOR Echovirus 18 empty particle half-map