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        <current_status>
            <date>2021-02-01</date>
            <code>OBS</code>
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        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-07-25</deposition>
            <header_release>2021-02-10</header_release>
            <obsolete>2021-02-10</obsolete>
            <update>2021-02-01</update>
        </key_dates>
        <title>Emptied bacterophage phiX174 complexed with lipopolysaccharides</title>
        <authors_list>
            <author>Rossmann MG</author>
            <author>Sun Y</author>
            <author>Klose T</author>
            <author>Roznowski A</author>
            <author>Fane BA</author>
            <author>Pollack L</author>
            <author>Tokuda J</author>
            <author>Mauney A</author>
        </authors_list>
    </admin>
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        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Sun L</author>
                    <author order="2">Young LN</author>
                    <author order="3">Zhang X</author>
                    <author order="4">Boudko SP</author>
                    <author order="5">Fokine A</author>
                    <author order="6">Zbornik E</author>
                    <author order="7">Roznowski AP</author>
                    <author order="8">Molineux IJ</author>
                    <author order="9">Rossmann MG</author>
                    <author order="10">Fane BA</author>
                    <title>Icosahedral bacteriophage phiX174 forms a tail for DNA transport during infection.</title>
                    <journal_abbreviation>Nature</journal_abbreviation>
                    <country>UK</country>
                    <volume>505</volume>
                    <first_page>432</first_page>
                    <last_page>435</last_page>
                    <year>2014</year>
                    <external_references type="PUBMED">24336205</external_references>
                    <external_references type="DOI">doi:10.1038/nature12816</external_references>
                    <external_references type="ISSN">1476-4687</external_references>
                    <external_references type="CSD">0006</external_references>
                    <external_references type="ASTM">NATUAS</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
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                <emdb_id>EMD-8858</emdb_id>
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                    <other>associated EM volume</other>
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            <emdb_reference>
                <emdb_id>EMD-8862</emdb_id>
                <relationship>
                    <other>other EM volume</other>
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        </emdb_list>
    </crossreferences>
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        <name>emptied bacteriophage phiX174 complexed with lipopolysacchrides from Salmonella enterica serotype typhimurium TV119 (Ra mutant)</name>
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                <name>emptied bacteriophage phiX174 complexed with lipopolysacchrides from Salmonella enterica serotype typhimurium TV119 (Ra mutant)</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="1246486">synthetic Enterobacteria phage phiX174.1f</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.01</theoretical>
                </molecular_weight>
            </complex_supramolecule>
            <organelle_or_cellular_component_supramolecule supramolecule_id="2">
                <name>lipopolysaccharides (rough strains) from Salmonella enterica serotype typhimurium TV119 (Ra mutant)</name>
                <parent>1</parent>
                <natural_source database="NCBI">
                    <organism ncbi="28901">Salmonella enterica</organism>
                    <strain>typhimurium TV119</strain>
                    <cellular_location>outer membrane</cellular_location>
                </natural_source>
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
    </sample>
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            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
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                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">1</concentration>
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">80</chamber_humidity>
                        <chamber_temperature units="K">298</chamber_temperature>
                        <instrument>GATAN CRYOPLUNGE 3</instrument>
                    </vitrification>
                    <details>Mixed with LPS and incubated at 33 degrees C for 1 minute</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <c2_aperture_diameter units="µm">100.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <coma_free/>
                    </alignment_procedure>
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                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <average_electron_dose_per_image units="e/Å^2">30.0</average_electron_dose_per_image>
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                    <number_selected>7500</number_selected>
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                        <software>
                            <name>CTFFIND3</name>
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                <startup_model type_of_model="OTHER">
                    <details>An icosahedral reconstruction from a small dataset</details>
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                    <number_classes_used>1</number_classes_used>
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                        <point_group>C5</point_group>
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                    <algorithm>BACK PROJECTION</algorithm>
                    <resolution units="Å" res_type="BY AUTHOR">9.9</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.4</version>
                        </software>
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                    <number_images_used>2400</number_images_used>
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                        <software>
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                <final_three_d_classification>
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        <label>::::EMDATABANK.org::::EMD-8858::::                                              </label>
        <annotation_details>Emptied bacteriophage phix174 complexed with lipopolysaccharide bilayer disk, low pass-filtered to 8 Angstrom</annotation_details>
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                <label>::::EMDATABANK.org::::EMD-8858::::                                              </label>
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                <label>::::EMDATABANK.org::::EMD-8858::::                                              </label>
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