<?xml version="1.0" encoding="UTF-8"?>
<emdEntry accessCode="8468" version="1.9.6">
    <admin>
        <lastUpdate>2018-02-14</lastUpdate>
    </admin>
    <deposition>
        <status>OBS</status>
        <depositionDate>2016-11-04</depositionDate>
        <depositionSite>RCSB</depositionSite>
        <processingSite>RCSB</processingSite>
        <headerReleaseDate>2017-03-15</headerReleaseDate>
        <mapReleaseDate>2018-02-07</mapReleaseDate>
        <obsoletedDate>2018-02-14</obsoletedDate>
        <title>BK channel with membrane density subtracted 8.1 angstrom (hSlo protein was reconstituted into POPC liposomes)</title>
        <authors>Tonggu L, Zhan X, Wang L</authors>
        <primaryReference published="false">
            <journalArticle>
                <authors>Tonggu L, Zhan X, Wang L</authors>
                <articleTitle>Cryo-EM study of the BK potassium channel in lipid membranes using random spherically constrained single-particle (RSC) method</articleTitle>
                <journal>To Be Published</journal>
                <externalReference type="csd">0353</externalReference>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file type="map" format="CCP4" sizeKb="3539">emd_8468.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numRows>96</numRows>
            <numColumns>96</numColumns>
            <numSections>96</numSections>
        </dimensions>
        <origin>
            <originRow>0.0</originRow>
            <originCol>0.0</originCol>
            <originSec>0.0</originSec>
        </origin>
        <limit>
            <limitRow>95.0</limitRow>
            <limitCol>95.0</limitCol>
            <limitSec>95.0</limitSec>
        </limit>
        <spacing>
            <spacingRow>96</spacingRow>
            <spacingCol>96</spacingCol>
            <spacingSec>96</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">241.92</cellA>
            <cellB units="A">241.92</cellB>
            <cellC units="A">241.92</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-0.005202601</minimum>
            <maximum>0.008175316</maximum>
            <average>-0.000054849264</average>
            <std>0.0005461847</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details></details>
        <pixelSpacing>
            <pixelX units="A">2.52</pixelX>
            <pixelY units="A">2.52</pixelY>
            <pixelZ units="A">2.52</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">0.000706</contourLevel>
        <annotationDetails>BK channel with membrane density subtracted 8.1 angstrom</annotationDetails>
    </map>
    <sample>
        <numComponents>1</numComponents>
        <name>large conductance voltage- and calcium-activated potassium (BK) channels</name>
        <details>full-length human Slo protein (GI:507922)</details>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>protein</entry>
                <sciName>large conductance voltage- and calcium-activated potassium (BK) channels</sciName>
                <molWtTheo units="MDa">500</molWtTheo>
                <details>full-length human Slo protein (GI:507922)</details>
                <protein>
                    <sciSpeciesName ncbiTaxId="9606">Homo sapiens</sciSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <engSource>
                        <expSystem ncbiTaxId="9606">Homo sapiens</expSystem>
                        <expSystemCell>hek293</expSystemCell>
                        <vector>pcdna3.1</vector>
                    </engSource>
                </protein>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <cryogenName>ETHANE</cryogenName>
            <humidity>40</humidity>
            <temperature units="Kelvin">298</temperature>
            <instrument>HOMEMADE PLUNGER</instrument>
            <details>Two-dimensional (2D) streptavidin crystals were grown at room temperature on perforated carbon grids. After the 2D streptavidin crystal was washed with crystal buffer (150mM NaCl, 50mM HEPES, pH 7.3) once and buffer A (20 mM HEPES, pH 7.2, 150 mM KC) twice, the crystal was incubated with BK proteoliposome suspensions for 10-40 min to allow binding. The sample was blotted at room temperature and immediately fast-frozen in liquid ethane cooled by liquid nitrogen.. </details>
        </vitrification>
        <imaging>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">1.0</electronDose>
            <imagingMode>BRIGHT FIELD</imagingMode>
            <illuminationMode>FLOOD BEAM</illuminationMode>
            <detector>GATAN K2 SUMMIT (4k x 4k)</detector>
            <nominalCs units="mm">2.0</nominalCs>
            <microscope>FEI TECNAI F20</microscope>
            <specimenHolderModel>GATAN LIQUID NITROGEN</specimenHolderModel>
            <acceleratingVoltage units="kV">200</acceleratingVoltage>
        </imaging>
        <imageAcquisition/>
        <specimenPreparation>
            <specimenState>particle</specimenState>
            <specimenConc units="mg/ml">0.2</specimenConc>
            <buffer>
                <ph>7.2</ph>
            </buffer>
            <specimenSupportDetails>hexane wash</specimenSupportDetails>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>singleParticle</method>
        <reconstruction>
            <algorithm>FOURIER SPACE</algorithm>
            <resolutionByAuthor>8.1</resolutionByAuthor>
            <resolutionMethod>FSC 0.143 CUT-OFF</resolutionMethod>
            <eulerAnglesDetails>RSC method written in matlab</eulerAnglesDetails>
        </reconstruction>
        <singleParticle>
            <appliedSymmetry>C4</appliedSymmetry>
            <numProjections>88041</numProjections>
        </singleParticle>
    </processing>
</emdEntry>
