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<emd emdb_id="EMD-8468" version="3.0.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-02-14</date>
            <code>OBS</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2016-11-04</deposition>
            <header_release>2017-03-15</header_release>
            <map_release>2018-02-07</map_release>
            <obsolete>2018-02-14</obsolete>
            <update>2018-02-14</update>
        </key_dates>
        <title>BK channel with membrane density subtracted 8.1 angstrom (hSlo protein was reconstituted into POPC liposomes)</title>
        <authors_list>
            <author>Tonggu L</author>
            <author>Zhan X</author>
            <author>Wang L</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="false">
                    <author order="1">Tonggu L</author>
                    <author order="2">Zhan X</author>
                    <author order="3">Wang L</author>
                    <title>Cryo-EM study of the BK potassium channel in lipid membranes using random spherically constrained single-particle (RSC) method</title>
                    <journal_abbreviation>To Be Published</journal_abbreviation>
                    <external_references type="CSD">0353</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-8468</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>large conductance voltage- and calcium-activated potassium (BK) channels</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>large conductance voltage- and calcium-activated potassium (BK) channels</name>
                <parent>0</parent>
                <details>full-length human Slo protein (GI:507922)</details>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                    <recombinant_cell>hek293</recombinant_cell>
                    <recombinant_plasmid>pcdna3.1</recombinant_plasmid>
                </recombinant_expression>
                <molecular_weight>
                    <theoretical units="kDa/nm">500</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.2</concentration>
                    <buffer>
                        <ph>7.2</ph>
                        <component>
                            <concentration units="mM">20.0</concentration>
                            <formula>C8H18N2O4S</formula>
                            <name>hepes</name>
                        </component>
                        <component>
                            <concentration units="mM">150.0</concentration>
                            <formula>KCl</formula>
                            <name>potassium chloride</name>
                        </component>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/2</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY ARRAY</film_topology>
                            <film_thickness units="nm">20.0</film_thickness>
                        </support_film>
                        <details>hexane wash</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">40</chamber_humidity>
                        <chamber_temperature units="K">298</chamber_temperature>
                        <instrument>HOMEMADE PLUNGER</instrument>
                        <details>Two-dimensional (2D) streptavidin crystals were grown at room temperature on perforated carbon grids. After the 2D streptavidin crystal was washed with crystal buffer (150mM NaCl, 50mM HEPES, pH 7.3) once and buffer A (20 mM HEPES, pH 7.2, 150 mM KC) twice, the crystal was incubated with BK proteoliposome suspensions for 10-40 min to allow binding. The sample was blotted at room temperature and immediately fast-frozen in liquid ethane cooled by liquid nitrogen.. </details>
                    </vitrification>
                    <details>BK proteins were reconstituted into POPC liposomes. The proteoliposomes were tethered onto the streptavidin crystal grown on a quantifoil grid</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <c2_aperture_diameter units="µm">100.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <calibrated_defocus_min units="µm">0.5</calibrated_defocus_min>
                    <calibrated_defocus_max units="µm">4.0</calibrated_defocus_max>
                    <specimen_holder_model>GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <coma_free/>
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>SUPER-RESOLUTION</detector_mode>
                            <average_exposure_time units="s">0.2</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">1.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>88041</number_selected>
                    <details>EM boxer and homemade matlab program</details>
                </particle_selection>
                <startup_model type_of_model="EMDB MAP">
                    <emdb_id>EMD-5114</emdb_id>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C4</point_group>
                    </applied_symmetry>
                    <algorithm>FOURIER SPACE</algorithm>
                    <resolution units="Å" res_type="BY AUTHOR">8.1</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>88041</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>OTHER</type>
                    <details>Employ constraints based on the spherical geometry of the proteoliposomes as previously described (Wang and Sigworth, 2009)</details>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <details>RSC method written in matlab</details>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="3539">
        <file>emd_8468.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>96</col>
            <row>96</row>
            <sec>96</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>96</x>
            <y>96</y>
            <z>96</z>
        </spacing>
        <cell>
            <a units="Å">241.92</a>
            <b units="Å">241.92</b>
            <c units="Å">241.92</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.005202601</minimum>
            <maximum>0.008175316</maximum>
            <average>-0.000054849264</average>
            <std>0.0005461847</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">2.52</x>
            <y units="Å">2.52</y>
            <z units="Å">2.52</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.000706</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-8468::::</label>
        <annotation_details>BK channel with membrane density subtracted 8.1 angstrom</annotation_details>
    </map>
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