<?xml version="1.0" encoding="UTF-8"?>
<emdEntry accessCode="8429" version="1.9.6">
    <admin>
        <lastUpdate>2018-06-27</lastUpdate>
    </admin>
    <deposition>
        <status>OBS</status>
        <depositionDate>2016-10-19</depositionDate>
        <depositionSite>RCSB</depositionSite>
        <processingSite>RCSB</processingSite>
        <headerReleaseDate>2016-11-16</headerReleaseDate>
        <obsoletedDate>2016-11-16</obsoletedDate>
        <title>Cryo-EM structure of human Enterovirus 71 strain 1095</title>
        <authors>Lee H, Nishimura Y, Conway JF, Makhov AM, Zhang L, Shimizu H, Winkler JD, Jergelson B, Hafenstein S</authors>
        <primaryReference published="false">
            <journalArticle>
                <authors>Lee H, Nishimura Y, Conway JF, Makhov AM, Zhang L, Shimizu H, Winkler JD, Bergelson J, Hafenstein S</authors>
                <articleTitle>Cryo-EM structures reveal binding of the PSGL-1 receptor and the antiviral drug NF449 to the 5-fold vertex of the enterovirus 71 capsid</articleTitle>
                <journal>To Be Published</journal>
                <externalReference type="csd">0353</externalReference>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file type="map" format="CCP4" sizeKb="186625">emd_8429.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numRows>360</numRows>
            <numColumns>360</numColumns>
            <numSections>360</numSections>
        </dimensions>
        <origin>
            <originRow>-180.0</originRow>
            <originCol>-180.0</originCol>
            <originSec>-180.0</originSec>
        </origin>
        <limit>
            <limitRow>179.0</limitRow>
            <limitCol>179.0</limitCol>
            <limitSec>179.0</limitSec>
        </limit>
        <spacing>
            <spacingRow>360</spacingRow>
            <spacingCol>360</spacingCol>
            <spacingSec>360</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">408.24</cellA>
            <cellB units="A">408.24</cellB>
            <cellC units="A">408.24</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-7.7551146</minimum>
            <maximum>12.846606</maximum>
            <average>0.000000004063702</average>
            <std>0.99999994</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details></details>
        <pixelSpacing>
            <pixelX units="A">1.134</pixelX>
            <pixelY units="A">1.134</pixelY>
            <pixelZ units="A">1.134</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">1.5</contourLevel>
        <annotationDetails>A sharpened 3D-reconstruction of EV71 strain 1095</annotationDetails>
    </map>
    <sample>
        <numComponents>6</numComponents>
        <name>Enterovirus A71</name>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>virus</entry>
                <sciName>Enterovirus A71</sciName>
                <virus>
                    <sciSpeciesName ncbiTaxId="39054">Enterovirus A71</sciSpeciesName>
                    <empty>false</empty>
                    <enveloped>false</enveloped>
                    <isolate>STRAIN</isolate>
                    <class>VIRION</class>
                </virus>
            </sampleComponent>
            <sampleComponent componentID="2">
                <entry>protein</entry>
                <sciName>Capsid protein VP1</sciName>
                <molWtTheo units="MDa">0.032646758</molWtTheo>
                <protein>
                    <sciSpeciesName ncbiTaxId="39054">Enterovirus A71</sciSpeciesName>
                    <numCopies>1</numCopies>
                    <recombinantExpFlag>false</recombinantExpFlag>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="3">
                <entry>protein</entry>
                <sciName>VP2</sciName>
                <molWtTheo units="MDa">0.026874252</molWtTheo>
                <protein>
                    <sciSpeciesName ncbiTaxId="39054">Enterovirus A71</sciSpeciesName>
                    <numCopies>1</numCopies>
                    <recombinantExpFlag>false</recombinantExpFlag>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="4">
                <entry>protein</entry>
                <sciName>VP3</sciName>
                <molWtTheo units="MDa">0.026466227</molWtTheo>
                <protein>
                    <sciSpeciesName ncbiTaxId="39054">Enterovirus A71</sciSpeciesName>
                    <numCopies>1</numCopies>
                    <recombinantExpFlag>false</recombinantExpFlag>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="5">
                <entry>protein</entry>
                <sciName>Genome polyprotein</sciName>
                <molWtTheo units="MDa">0.006380943</molWtTheo>
                <protein>
                    <sciSpeciesName ncbiTaxId="39054">Enterovirus A71</sciSpeciesName>
                    <numCopies>1</numCopies>
                    <recombinantExpFlag>false</recombinantExpFlag>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="6">
                <entry>ligand</entry>
                <sciName>SPHINGOSINE</sciName>
                <molWtTheo units="MDa">0.000299492</molWtTheo>
                <ligand>
                    <numCopies>1</numCopies>
                    <recombinantExpFlag>false</recombinantExpFlag>
                </ligand>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <cryogenName>ETHANE</cryogenName>
            <instrument>GATAN CRYOPLUNGE 3</instrument>
            <details></details>
        </vitrification>
        <imaging>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">7.14</electronDose>
            <imagingMode>BRIGHT FIELD</imagingMode>
            <illuminationMode>SPOT SCAN</illuminationMode>
            <detector>FEI FALCON II (4k x 4k)</detector>
            <microscope>FEI POLARA 300</microscope>
            <specimenHolderModel>OTHER</specimenHolderModel>
            <acceleratingVoltage units="kV">300</acceleratingVoltage>
        </imaging>
        <imageAcquisition/>
        <specimenPreparation>
            <specimenState>particle</specimenState>
            <buffer>
                <ph>7.5</ph>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>singleParticle</method>
        <reconstruction>
            <resolutionByAuthor>3.6</resolutionByAuthor>
            <resolutionMethod>FSC 0.143 CUT-OFF</resolutionMethod>
        </reconstruction>
        <singleParticle>
            <numProjections>15208</numProjections>
        </singleParticle>
    </processing>
</emdEntry>
