<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_2/emdb.xsd" emdb_id="EMD-7840" version="3.0.2.2">
    <admin>
        <current_status>
            <date>2021-02-01</date>
            <code>OBS</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-05-01</deposition>
            <header_release>2021-02-10</header_release>
            <obsolete>2021-02-10</obsolete>
            <update>2021-02-01</update>
        </key_dates>
        <title>BBSome complex</title>
        <authors_list>
            <author>Chou H</author>
            <author>Apelt L</author>
            <author>Farrell DP</author>
            <author>White SR</author>
            <author>Woodsmith J</author>
            <author>Svetlov V</author>
            <author>Goldstein JS</author>
            <author>Nager AR</author>
            <author>Li Z</author>
            <author>Muller J</author>
            <author>Dollfus H</author>
            <author>Nudler E</author>
            <author>Stelzl U</author>
            <author>DiMaio F</author>
            <author>Walz T</author>
            <author>Nachury NV</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="false">
                    <author order="1">Chou H</author>
                    <author order="2">Apelt L</author>
                    <author order="3">Farrell DP</author>
                    <author order="4">White SR</author>
                    <author order="5">Woodsmith J</author>
                    <author order="6">Svetlov V</author>
                    <author order="7">Goldstein JS</author>
                    <author order="8">Nager AR</author>
                    <author order="9">Li Z</author>
                    <author order="10">Muller J</author>
                    <author order="11">Dollfus H</author>
                    <author order="12">Nudler E</author>
                    <author order="13">Stelzl U</author>
                    <author order="14">DiMaio F</author>
                    <author order="15">Walz T</author>
                    <author order="16">Nachury MV</author>
                    <title>The molecular architecture of the BBSome and its implications for facilitated transition zone crossing</title>
                    <journal_abbreviation>To Be Published</journal_abbreviation>
                    <external_references type="CSD">0353</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-7840</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>BBSome</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>BBSome</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>5</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>6</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>7</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>8</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>BBS5</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MSVLDALWEDRDVRFDVSSQQMKTRPGEVLIDCLDSVEDTKGNNGDRGRLLVTNLRIVWH
SLALPRVNLSIGYNCILNITTRTANSKLRGQTEALYVLTKCNSTRFEFIFTNLVPGSPRL
YTSLIAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQENVYNKINGVWNLSSDQGNLGTF
FITNVRIVWHANMNDSFNVSIPYLQIRSVKIRDSKFGLALVIESSQQSGGYVLGFKIDPV
EKLQESVKEINSLHKVYSANPIFGVDYEMEEKPQPLEALTVKQIQDDVEIDSDDHTDAFV
AYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMN</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>BBS9</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MSLFKARDWWSTVLGDKEEFDQGCLCLADVDNTGNGQDKIIVGSFMGYLRIFNPHPVKTG
DGAQAEDLLLEVHLRDPILQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQ
YQIKLMYEHNLQRTACNMTYGSFGGVKGRDLICIQSVDGMLMVFEQESYAFGRFLPGSLL
PGPLAYSSRTDSFITVSSCHQVESYKYQVLAFATDADKRQETEQQKHGSGKRLVVDWTLN
IGEQAIDICIVSFIQSASSVFVLGERNFFCLKDNGQIQFMKKLDYSPSCFLPYCSVSEGT
INTLIGNHNNMLHIYQDVTLKWATQLPHVPVAVRVGCLHDLKGVIVTLSDDGHLQCSYLG
TDPSLFQAPKVESRELNYDELDMELKELQKVIKNVNKSQDVWPLTEREDDLKVSAMVSPN
FDSVSQATDVEVGADLVPSVTVKVTLKNRVALQKIKLSIYVQPPLVLTGDQFTFEFMAPE
MTRTVGFSVYLKGSYSPPELEGNAVVSYSRPTERNPDGIPRVSQCKFRLPLKLVCLPGQP
SKTASHKLTIDTNKSPVSLLSLFPGFAKQSEDDQVNVMGFRFLGGSQVTLLASKTSQRYR
IQSEQFEDLWLITNELIIRLQEYFEKQGIKDFTCSFSGSVPLEEYFELIDHHFELRINGE
KLEELLSERAVQFRAIQRRLLTRFKDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDNL
FQSFTRLKSATHLVILLIGLWQKLSADQIAILEAAFLPLQQDTQELGWEETVDAALSHLL
KTCLSKSSKEQALNLNSQLGIPKDTSQLKKHITLFCDRLAKGGRLCLSTDAAAPQTMVMP
GGCATIPESDLEGRSIDQDSSELFTNHKHLMVETPVPEVSPLQGVTE</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>BBS1</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MAATSSSDSDGGKGESSEANSKWLDSLSDSMANIHTFSACLALADFHGDGEYKLAMGDLG
PDGRQPRLKVLKGHTLVSQKPLPDLPAAAVTFLMASHEPRTPALAIASGPCVYVYKNLKP
YFKFSLPSLPTNPLEQDLWNQAKEDQIDPLTLKEMLEGIREKAEVPLSVQSLRFLPLELS
EMEAFVNQHKSKSIRRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILA
KMSLPSVPAFLEASGQFDVEFRLAAACRNGSIYILRRDSKRPKYCIELGAQPVGLVGVHK
VLVVGSNQDSLHGFTYKGKRLWTVQMPAAILAMNLLEQHSRGLQAVMAALANEEVRIYHD
KVLLNVIRTPEAVTSLCFGRYGREDNTLIMTTLGGGLIIKILKRTAVFAEGGGEAGPPPS
QAIKLNVPRKTRLYVDQTLREREAGTAMHRTFQADLYLLRLRAARAYVQALESSLSPVSL
TAREPLKLHAVVQGLGPTFKLTLHLQNTSTARPILGLVVCFLYNEVLYALPRAFFKVPLL
VPGLNYPLETFVKSLSDKGISDIIKVLVLREGQSTPLLSAHINMPMSEGLAAD</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="4">
                <name>BBS7</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MLFSSSVPFVGVTSQKTMKLLPASKHRATQKVVVGDHDGIVMCFGMKKGEAVTVFKTLPG
QKIARLELGGALNTPQEKIFIAAGSEIRGFTKRGKQFLSFETNLTESIKAMHISGSDLFL
SASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLLREVPVLACQDRVLRVLQGSDVTYE
IEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLGLIQITTSKPIHKWEIRNEKKRGGILC
VDSFDIVGDGVKDLLVGRDDGMVEVYGFDNANEPVLRFDHTLSESVTSIQGGCVGKDGYD
EIVVSTYSGWITGLTTEPVHKESGPGEELKFNQEMQNKISSLRSELEQLQYKVLQEREKY
QQSSQSSKAKSAVPSFSVNDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDVDKN
SAVVSFSSCDSESNDNFLLATYRCQANTTRLELKIRSIEGQYGTLQAYVTPRIQPKTCQV
RQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFSELHSWVVFCMPEVPEKPPAGECVTF
YFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEVSVK
HTLKLIHPKLEYQLLLAKKVQLIDALKELQVHEGNTNFLIPEYRCILEEADHLQEEYKKQ
PAHLERLYGMITDLFIDKFKFKGTNVKTKVPLLLEILDSYDQNALIAFFDAA</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="5">
                <name>BBS8</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>APASDMEPLLLAWSYFRRRRFQLCADLCTQMLEKSPCDQAAWILKARALTEMVYVDEIDV
DEEGIAEMILDENAIAQVPRPGTSLKLPGTNQTGGPSPAVRPVTQAGRPITGFLRPSTQS
GRPGTIEQAIKTPRTAYTARPIASSSGRFVRLGTASMLTSPDGPFINLSRLNLAKYAQKP
KLAKALFEYIFHHENDVKTALDLAALSTEHSQYKDWWWKVQIGKCYYRLGLYREAEKQFK
SALKQQEMVDTFLYLAKVYISLDQPLTALNLFKQGLDKFPGEVTLLCGIARIYEEMNNIS
SATEYYKEVLKQDNTHVEAIACIGSNHFYTDQPEVALRFYRRLLQMGVYNCQLFNNLGLC
CFYAQQYDMTLTSFERALSLAENEEEVADVWYNLGHVAVGTGDTNLAHQCFRLALVSNNQ
HAEAYNNLAVLEMRRGHVEQAKALLQTASSLAPHMYEPHFNFATISDKIGDLQRSYAAAK
KSEAAFPDHVDTQHLIKQLEQHFAML</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="6">
                <name>BBS18</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MLSAAHKSFCFPSATQDETVSNISDMAETKSMFREVLPKQDLGQLYVEDITTMVLCKPKL
LPLKSLTLEKLEKMQQAAQDTIHQQEMTEKEQKITH</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="7">
                <name>BBS4</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MAEEKLSARTQLPVSAESQKPVLKKAPEFPILEKQNWLIHLYYIQKDYEACKAVIKEQLQ
ETHGLCEYAIYVQALIFRLEGNIQESLRLFQMCAFLSPQCADNLKQVARSLFLLGKHKAA
IEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGKIFLL
KGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNTLTYDPTNYKAIL
AAGSMMQTHGDFDVALTKYKVVACAVIESPPLWNNIGMCFFGKKKYVAAISCLKRANYLA
PLDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDSENAKRA
YEEAVRLDKCNPLVNLNYAVLLYNQGEKRDALAQYQEMEKKVNLLKYSSSLEFDPEMVEV
AQKLGAALQVGEALVWTKPVKDPKSKHQTASTSKAAGFQQPLGSNQALGQAMSSAATCRK
LSSGAGGTSQLTKPPSLPLEPEPTVEAQPTEASAQTREK</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="8">
                <name>BBS2</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MLQPVFTLKLRHKISPRMVAVGRYDGTHPCLAAATQAGKVFIHNPHSRSQHLGAPRVLQS
PLESDVSLLNINQTVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGA
SAIVLGTLGDITSPLAIIGGNCALQGFNHEGNDLFWTVTGDNVHSLALCDFDGDGKKELL
VGSEDFDIRVFKEDEIVAEMSETEIITSLCPMYGSRFGYALSNGTVGVYDKTARYWRIKS
KNQAMSIHAFDLNSDGVCELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRME
GCQQLICCSVDGEIRGYLPGTAEMRGNLMDISVEQDLIRELSQKKQNLLLELRNYEENAK
AELSSPLNEADGHRGVIPANTKHHTALSVSLGSEAQAAHAELCISTSNDTIIRAVLIFAE
GVFAGESHVVHPSVHHLSSSVRIPITPPKDIPVDLHLKTFVGYRSSTQFHVFELTRQLPR
FSMYALTSPDPASEPLSYVNFIIAERAQRVVMWLNQNFLLPEDTNIQNAPFQVCFTSLRN
GGQLYIKIKLSGEITVNTDDIDLAGDIIQSMASFFAIEDLQVEADFPVYFEELRKVLVKV
DEYHSVHQKLSADMADNSNLIRSLLVQAEDARLMRDMKTMKNRYKELYDLNKDLLNGYKI
RCNNHTELLGSLKAVNQAIQRAGHLRVGKPKNQVITACRDAIRSNNINMLFRIMRVGTAS
S</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.0</ph>
                        <details>40 mM HEPES, 220 mM NaCl, 1 mM DTT</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil R1.2/1.3</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI POLARA 300</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>SUPER-RESOLUTION</detector_mode>
                            <number_real_images>870</number_real_images>
                            <average_electron_dose_per_image units="e/Å^2">46.8</average_electron_dose_per_image>
                        </image_recording>
                        <image_recording image_recording_id="2">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>SUPER-RESOLUTION</detector_mode>
                            <digitization_details/>
                            <number_real_images>1630</number_real_images>
                            <average_electron_dose_per_image units="e/Å^2">89.7</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>CTFFIND</name>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">4.9</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3</version>
                        </software>
                    </software_list>
                    <number_images_used>33492</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="131073">
        <file>emd_7840.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>320</col>
            <row>320</row>
            <sec>320</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>320</x>
            <y>320</y>
            <z>320</z>
        </spacing>
        <cell>
            <a units="Å">393.6</a>
            <b units="Å">393.6</b>
            <c units="Å">393.6</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.025044426</minimum>
            <maximum>0.09222394</maximum>
            <average>0.0002497337</average>
            <std>0.0033914752</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.23</x>
            <y units="Å">1.23</y>
            <z units="Å">1.23</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.03</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-7840::::                                              </label>
        <annotation_details>primary map</annotation_details>
    </map>
</emd>
