<?xml version="1.0" encoding="UTF-8"?>
<emdEntry accessCode="6302" version="1.9.6">
    <admin>
        <lastUpdate>2016-03-23</lastUpdate>
    </admin>
    <deposition>
        <status prior="REL">OBS</status>
        <depositionDate>2015-03-13</depositionDate>
        <depositionSite>RCSB</depositionSite>
        <processingSite>PDBj</processingSite>
        <headerReleaseDate>2015-05-06</headerReleaseDate>
        <mapReleaseDate>2016-03-23</mapReleaseDate>
        <obsoletedDate>2016-03-23</obsoletedDate>
        <details>authors are working on a higher-resolution map and not planning to publish this low-resolution structure</details>
        <title>The cryo-EM structure of Meiothermus taiwanensis Lon protease without ATP and Mg2+</title>
        <authors>Su SC, Chang YC, Chang CI</authors>
        <keywords>ATP-dependent protease, sequestered degradation chamber, AAA+ domain, protease domain</keywords>
        <primaryReference published="false">
            <journalArticle>
                <authors>Su SC, Chang YC, Chang CI</authors>
                <articleTitle>Structural modulators control the assembly and activity of the Lon AAA+ protease</articleTitle>
                <journal>To Be Published</journal>
                <volume/>
                <firstPage/>
                <lastPage/>
                <year/>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file format="CCP4" sizeKb="6751" type="map">emd_6302.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numColumns>120</numColumns>
            <numRows>120</numRows>
            <numSections>120</numSections>
        </dimensions>
        <origin>
            <originCol>-60</originCol>
            <originRow>-60</originRow>
            <originSec>-60</originSec>
        </origin>
        <limit>
            <limitCol>59</limitCol>
            <limitRow>59</limitRow>
            <limitSec>59</limitSec>
        </limit>
        <spacing>
            <spacingCol>120</spacingCol>
            <spacingRow>120</spacingRow>
            <spacingSec>120</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">198.0</cellA>
            <cellB units="A">198.0</cellB>
            <cellC units="A">198.0</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-65.58416748</minimum>
            <maximum>240.97012329</maximum>
            <average>10.53799057</average>
            <std>35.73754883</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details>::::EMDATABANK.org::::EMD-6302::::</details>
        <pixelSpacing>
            <pixelX units="A">1.65</pixelX>
            <pixelY units="A">1.65</pixelY>
            <pixelZ units="A">1.65</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">170</contourLevel>
        <annotationDetails>Reconstruction of Meiothermus taiwanensis LonA protease</annotationDetails>
    </map>
    <supplement>
        <maskSet/>
        <sliceSet/>
        <figureSet>
            <figure>
                <file>emd_6302.tiff</file>
            </figure>
        </figureSet>
        <fscSet/>
    </supplement>
    <sample>
        <numComponents>1</numComponents>
        <name>Meiothermus taiwanensis LonA protease</name>
        <compDegree>One homotetramer of MtaLonA in apo form</compDegree>
        <molWtTheo units="MDa">0.54</molWtTheo>
        <molWtMethod>Sedimentation</molWtMethod>
        <molWtExp units="MDa">0.54</molWtExp>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>protein</entry>
                <sciName>Meiothermus taiwanensis LonA protease</sciName>
                <synName>MtaLonA</synName>
                <molWtTheo units="MDa">0.54</molWtTheo>
                <molWtExp units="MDa">0.54</molWtExp>
                <protein>
                    <sciSpeciesName ncbiTaxId="172827">Meiothermus taiwanensis</sciSpeciesName>
                    <recombinantExpFlag>true</recombinantExpFlag>
                    <oligomericDetails>Tetramer</oligomericDetails>
                    <synSpeciesName>Meiothermus taiwanensis</synSpeciesName>
                    <externalReferences/>
                    <natSource/>
                    <engSource>
                        <vector>PET21a</vector>
                        <expSystem ncbiTaxId="562">Escherichia coli</expSystem>
                    </engSource>
                </protein>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <method>1. wait for 10 seconds before blot
2. Blot for 3 seconds before plunging</method>
            <cryogenName>ETHANE</cryogenName>
            <humidity>100</humidity>
            <instrument>FEI VITROBOT MARK IV</instrument>
        </vitrification>
        <imaging>
            <astigmatism>Objective lens astigmatism was corrected at 100,000 times magnification</astigmatism>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">20</electronDose>
            <imagingMode>BRIGHT FIELD</imagingMode>
            <nominalDefocusMin units="nm">1000</nominalDefocusMin>
            <nominalDefocusMax units="nm">5000</nominalDefocusMax>
            <illuminationMode>FLOOD BEAM</illuminationMode>
            <detector>GATAN ULTRASCAN 4000 (4k x 4k)</detector>
            <nominalCs units="mm">2</nominalCs>
            <calibratedMagnification>80000</calibratedMagnification>
            <microscope>FEI TECNAI F20</microscope>
            <date>09-OCT-1995</date>
            <specimenHolderModel>GATAN LIQUID NITROGEN</specimenHolderModel>
            <acceleratingVoltage units="kV">200</acceleratingVoltage>
            <nominalMagnification>62000</nominalMagnification>
        </imaging>
        <imageAcquisition>
            <numDigitalImages>122</numDigitalImages>
        </imageAcquisition>
        <fitting/>
        <specimenPreparation>
            <staining>Grids with adsorbed protein floated on 2% w/v uranyl acetate for 60 seconds.</staining>
            <specimenState>particle</specimenState>
            <specimenConc units="mg/ml">0.12</specimenConc>
            <specimenSupportDetails>200 mesh gold grid with thin carbon support, glow discharged in amylamine atmosphere</specimenSupportDetails>
            <buffer>
                <details>20mM Tris-HCl, 100mM NaCl, 1mM DTT</details>
                <ph>8.0</ph>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>singleParticle</method>
        <reconstruction>
            <software>EMAN2</software>
            <ctfCorrection>Each particle</ctfCorrection>
            <resolutionByAuthor>15.1</resolutionByAuthor>
            <resolutionMethod>FSC 0.5, semi-independent</resolutionMethod>
        </reconstruction>
        <singleParticle>
            <numClassAverages>80</numClassAverages>
            <appliedSymmetry>C4</appliedSymmetry>
            <numProjections>14790</numProjections>
            <details>The particle images were interactively selected using EMAN Boxer program</details>
        </singleParticle>
    </processing>
</emdEntry>
