<?xml version="1.0" encoding="UTF-8"?>
<emdEntry accessCode="5894" version="1.9.6">
    <admin>
        <lastUpdate>2014-10-22</lastUpdate>
    </admin>
    <deposition>
        <status prior="HPUB">OBS</status>
        <depositionDate>2014-02-06</depositionDate>
        <depositionSite>RCSB</depositionSite>
        <processingSite>RCSB</processingSite>
        <headerReleaseDate>2014-03-19</headerReleaseDate>
        <obsoletedDate>2014-10-22</obsoletedDate>
        <supersededByList>
            <entry>EMD-6101</entry>
        </supersededByList>
        <details>The same entry was deposited twice.</details>
        <title>CryoEM of Actin-Coronin in ADP-BeFx state</title>
        <authors>Ge P, Durer ZAO, Kudryashov D, Zhou ZH, Reisler E</authors>
        <keywords>Actin, coronin, ADP-BeFx, ADP-Pi, cytoskeleton</keywords>
        <primaryReference published="false">
            <journalArticle>
                <authors>Ge P, Durer ZAO, Kudryashov D, Zhou ZH, Reisler E</authors>
                <articleTitle>CryoEM reveals different coronin binding modes for ADP- and ADP-BeFx- actin filaments</articleTitle>
                <journal>To Be Published</journal>
                <volume/>
                <firstPage/>
                <lastPage/>
                <year/>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file format="CCP4" sizeKb="128001" type="map">emd_5894.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numColumns>320</numColumns>
            <numRows>320</numRows>
            <numSections>320</numSections>
        </dimensions>
        <origin>
            <originCol>-160</originCol>
            <originRow>-160</originRow>
            <originSec>-160</originSec>
        </origin>
        <limit>
            <limitCol>159</limitCol>
            <limitRow>159</limitRow>
            <limitSec>159</limitSec>
        </limit>
        <spacing>
            <spacingCol>320</spacingCol>
            <spacingRow>320</spacingRow>
            <spacingSec>320</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">459.84003</cellA>
            <cellB units="A">459.84003</cellB>
            <cellC units="A">459.84003</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-2.38070107</minimum>
            <maximum>14.65618706</maximum>
            <average>0.17305121</average>
            <std>1.01450169</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details>::::EMDATABANK.org::::EMD-5894::::</details>
        <pixelSpacing>
            <pixelX units="A">1.437</pixelX>
            <pixelY units="A">1.437</pixelY>
            <pixelZ units="A">1.437</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">6</contourLevel>
        <annotationDetails>Reconstruction of Actin-coronin in ADP-BeFx state</annotationDetails>
    </map>
    <supplement>
        <maskSet/>
        <sliceSet/>
        <figureSet/>
        <fscSet/>
    </supplement>
    <sample>
        <numComponents>2</numComponents>
        <name>Coronin decorated Actin filament in ADP-BeFx state</name>
        <compDegree>helical 1:1</compDegree>
        <details>The sample was treated with BeFx.</details>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>protein</entry>
                <sciName>Actin</sciName>
                <synName>Actin, alpha skeletal muscle</synName>
                <molWtTheo units="MDa">0.042</molWtTheo>
                <protein>
                    <oligomericDetails>Helix</oligomericDetails>
                    <sciSpeciesName ncbiTaxId="9986">Oryctolagus cuniculus</sciSpeciesName>
                    <synSpeciesName>Rabbit</synSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <externalReferences>
                        <refUniProt>P68135</refUniProt>
                    </externalReferences>
                    <natSource>
                        <organOrTissue>Muscle</organOrTissue>
                    </natSource>
                    <engSource/>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="2">
                <entry>protein</entry>
                <sciName>coronin</sciName>
                <synName>Coronin-like protein</synName>
                <molWtTheo units="MDa">0.073</molWtTheo>
                <protein>
                    <oligomericDetails>helical</oligomericDetails>
                    <recombinantExpFlag>true</recombinantExpFlag>
                    <sciSpeciesName ncbiTaxId="4932">Saccharomyces cerevisiae</sciSpeciesName>
                    <synSpeciesName>Yeast</synSpeciesName>
                    <externalReferences>
                        <refUniProt>Q06440</refUniProt>
                    </externalReferences>
                    <natSource/>
                    <engSource>
                        <expSystem ncbiTaxId="562">Escherichia coli</expSystem>
                    </engSource>
                </protein>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <method>blot force 1, blot time 4s, blot once, wait time 2s, drain time 2s; sample volume applied to each grid was 2.5 uL</method>
            <cryogenName>ETHANE</cryogenName>
            <humidity>100</humidity>
            <instrument>FEI VITROBOT MARK IV</instrument>
        </vitrification>
        <imaging>
            <astigmatism>Software</astigmatism>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">25</electronDose>
            <imagingMode>BRIGHT FIELD</imagingMode>
            <nominalDefocusMin units="nm">2000</nominalDefocusMin>
            <nominalDefocusMax units="nm">4000</nominalDefocusMax>
            <illuminationMode>FLOOD BEAM</illuminationMode>
            <specimenHolder>Nitrogen cooled</specimenHolder>
            <detector>GATAN ULTRASCAN 4000 (4k x 4k)</detector>
            <nominalCs units="mm">2.7</nominalCs>
            <calibratedMagnification>104384</calibratedMagnification>
            <temperature units="Kelvin">80</temperature>
            <microscope>FEI TITAN KRIOS</microscope>
            <date>23-OCT-2012</date>
            <specimenHolderModel>FEI TITAN KRIOS AUTOGRID HOLDER</specimenHolderModel>
            <acceleratingVoltage units="kV">120</acceleratingVoltage>
            <nominalMagnification>59000</nominalMagnification>
        </imaging>
        <imageAcquisition>
            <numDigitalImages>1200</numDigitalImages>
            <samplingSize units="microns">15</samplingSize>
            <quantBitNumber>16</quantBitNumber>
        </imageAcquisition>
        <fitting>
            <software>Chimera</software>
            <refProtocol>rigid body</refProtocol>
            <refSpace>REAL</refSpace>
            <pdbEntryIdList>
                <pdbEntryId>3MFP</pdbEntryId>
            </pdbEntryIdList>
        </fitting>
        <specimenPreparation>
            <helicalParameters>
                <deltaZ units="A">28.23</deltaZ>
                <deltaPhi units="degrees">166.9</deltaPhi>
                <axialSymmetry>C1</axialSymmetry>
                <hand>LEFT HANDED</hand>
            </helicalParameters>
            <specimenState>filament</specimenState>
            <specimenSupportDetails>200 mesh Quantifoil, baked and glow-discharged</specimenSupportDetails>
            <buffer>
                <ph>7.5</ph>
                <details>10 mM Tris, 0.2 mM CaCl2, 1mM DTT, 1 mM MgCl2, 0.1 mM BeCl2, mM NaF, 0.2 mM ATP, 50 mM KCl</details>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>helical</method>
        <reconstruction>
            <algorithm>EMAN</algorithm>
            <software>EMAN, IHRSR</software>
            <ctfCorrection>ctffind3, software astigmatism correction</ctfCorrection>
            <resolutionByAuthor>5.1</resolutionByAuthor>
            <resolutionMethod>FSC 0.143, semi-independent</resolutionMethod>
        </reconstruction>
        <helical>
            <details>IHRSR</details>
        </helical>
    </processing>
</emdEntry>
