<?xml version="1.0" encoding="UTF-8"?>
<emd emdb_id="EMD-5893" version="3.0.1.9">
    <admin>
        <status_history_list>
            <status status_id="1">
                <code>HPUB</code>
            </status>
        </status_history_list>
        <current_status>
            <code superseded="true">OBS</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2014-02-06</deposition>
            <header_release>2014-03-19</header_release>
            <obsolete>2014-10-22</obsolete>
            <update>2014-10-22</update>
        </key_dates>
        <superseded_by_list>
            <entry>
                <entry>EMD-6100</entry>
            </entry>
        </superseded_by_list>
        <title>CryoEM of Actin-Coronin in ADP state</title>
        <authors_list>
            <author>Ge P</author>
            <author>Durer ZAO</author>
            <author>Kudryashov D</author>
            <author>Zhou ZH</author>
            <author>Reisler E</author>
        </authors_list>
        <keywords>Actin, coronin, ADP, cytoskeleton</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="false">
                    <author order="1">Ge P</author>
                    <author order="2">Durer ZAO</author>
                    <author order="3">Kudryashov D</author>
                    <author order="4">Zhou ZH</author>
                    <author order="5">Reisler E</author>
                    <title>CryoEM reveals different coronin binding modes for ADP- and ADP-BeFx- actin filaments</title>
                    <journal>To Be Published</journal>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Coronin decorated Actin filament in ADP state</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Coronin decorated Actin filament in ADP state</name>
                <details>The sample was aged in the presence of hexokinase to deplete ATP.</details>
                <oligomeric_state>helical 1:1</oligomeric_state>
                <number_unique_components>2</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="Actin, alpha skeletal muscle">Actin</name>
                <natural_source database="NCBI">
                    <organism ncbi="9986">Oryctolagus cuniculus</organism>
                    <synonym_organism>Rabbit</synonym_organism>
                    <tissue>Muscle</tissue>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.042</theoretical>
                </molecular_weight>
                <oligomeric_state>Helix</oligomeric_state>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI"/>
                <sequence>
                    <external_references type="UNIPROTKB">P68135</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name synonym="Coronin-like protein">coronin</name>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                    <synonym_organism>Yeast</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.073</theoretical>
                </molecular_weight>
                <oligomeric_state>helical</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <sequence>
                    <external_references type="UNIPROTKB">Q06440</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                        <details>10 mM Tris, 0.2 mM CaCl2, 1mM DTT, 1 mM MgCl2, 50 mM KCl</details>
                    </buffer>
                    <grid>
                        <details>200 mesh Quantifoil, baked and glow-discharged</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <method>blot force 1, blot time 4s, blot once, wait time 2s, drain time 2s; sample volume applied to each grid was 2.5 uL</method>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">2.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">4.0</nominal_defocus_max>
                    <nominal_magnification>59000.0</nominal_magnification>
                    <calibrated_magnification>104384.0</calibrated_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <temperature>
                        <temperature_average units="K">80</temperature_average>
                    </temperature>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>Software</astigmatism>
                        </legacy>
                    </alignment_procedure>
                    <date>2012-12-12</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                            <digitization_details>
                                <sampling_interval units="µm">15</sampling_interval>
                            </digitization_details>
                            <number_real_images>1380</number_real_images>
                            <average_electron_dose_per_image units="e/Å^2">25</average_electron_dose_per_image>
                            <bits_per_pixel>16.0</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>Nitrogen cooled</specimen_holder>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <details>IHRSR</details>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="Å">28.18</delta_z>
                            <delta_phi units="deg">165.9</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <algorithm>OTHER</algorithm>
                    <resolution units="Å" res_type="BY AUTHOR">6.1</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN, IHRSR</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <ctf_correction>
                    <details>ctffind3, software astigmatism correction</details>
                </ctf_correction>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="128001">
        <file>emd_5893.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>320</col>
            <row>320</row>
            <sec>320</sec>
        </dimensions>
        <origin>
            <col>-160</col>
            <row>-160</row>
            <sec>-160</sec>
        </origin>
        <spacing>
            <x>320</x>
            <y>320</y>
            <z>320</z>
        </spacing>
        <cell>
            <a units="Å">459.84003</a>
            <b units="Å">459.84003</b>
            <c units="Å">459.84003</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-2.28358412</minimum>
            <maximum>14.86220837</maximum>
            <average>0.18626508</average>
            <std>1.09664905</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.437</x>
            <y units="Å">1.437</y>
            <z units="Å">1.437</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>7.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>Reconstruction of Actin-coronin in ADP state</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5893::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>3MFP</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>Chimera</name>
                    </software>
                </software_list>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>
