<?xml version='1.0' encoding='utf-8'?>
<emdEntry accessCode="4718" version="1.9.6" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v1/v1_9/emdb_v1_9_6.xsd">
    <admin>
        <lastUpdate>2021-11-22</lastUpdate>
    </admin>
    <deposition>
        <status>OBS</status>
        <depositionDate>2019-03-20</depositionDate>
        <depositionSite>PDBe</depositionSite>
        <processingSite>PDBe</processingSite>
        <headerReleaseDate>2021-12-01</headerReleaseDate>
        <obsoletedDate>2021-12-01</obsoletedDate>
        <title>Suppressed</title>
        <authors>Suppressed X, Suppressed X, Suppressed X</authors>
        <fittedPDBEntryIdList>
            <fittedPDBEntryId>6r3h</fittedPDBEntryId>
        </fittedPDBEntryIdList>
        <primaryReference published="false">
            <journalArticle>
                <authors>Suppressed X, Suppressed X, Suppressed X</authors>
                <articleTitle>Suppressed</articleTitle>
                <journal>Suppressed</journal>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file format="CCP4" sizeKb="44958" type="map">emd_4718.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numRows>224</numRows>
            <numColumns>224</numColumns>
            <numSections>224</numSections>
        </dimensions>
        <origin>
            <originRow>-112.0</originRow>
            <originCol>-112.0</originCol>
            <originSec>-112.0</originSec>
        </origin>
        <limit>
            <limitRow>111.0</limitRow>
            <limitCol>111.0</limitCol>
            <limitSec>111.0</limitSec>
        </limit>
        <spacing>
            <spacingRow>224</spacingRow>
            <spacingCol>224</spacingCol>
            <spacingSec>224</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">234.52802</cellA>
            <cellB units="A">234.52802</cellB>
            <cellC units="A">234.52802</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-0.09405723</minimum>
            <maximum>0.17276947</maximum>
            <average>-3.6032765e-05</average>
            <std>0.0043969885</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details />
        <pixelSpacing>
            <pixelX units="A">1.047</pixelX>
            <pixelY units="A">1.047</pixelY>
            <pixelZ units="A">1.047</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">0.0153</contourLevel>
        <annotationDetails>Suppressed</annotationDetails>
    </map>
    <sample>
        <numComponents>3</numComponents>
        <name>Suppressed</name>
        <details>Suppressed</details>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>protein</entry>
                <sciName>Suppressed</sciName>
                <molWtExp units="MDa">1</molWtExp>
                <details>Suppressed</details>
                <protein>
                    <sciSpeciesName ncbiTaxId="32644">Suppressed</sciSpeciesName>
                    <sciSpeciesStrain>Suppressed</sciSpeciesStrain>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <engSource>
                        <expSystem ncbiTaxId="32644">Suppressed</expSystem>
                    </engSource>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="2">
                <entry>protein</entry>
                <sciName>Suppressed</sciName>
                <molWtTheo units="MDa">1e-06</molWtTheo>
                <details>In chains A, B and C, residue Asn414 is covalently modified with an N-linked N-acetyl glucosamine ligand. Chains A, B and C each contain the following 15 disulfide bonds: Cys1-Cys41, Cys14-Cys23, Cys66-Cys162, Cys87-Cys135, Cys93-Cys142, Cys98-Cys123, Cys127-Cys132, Cys129-Cys138, Cys246-Cys257, Cys264-Cys277, Cys266-Cys275, Cys337-Cys408, Cys347-Cys350, Cys360-Cys382, Cys373-Cys404.</details>
                <protein>
                    <sciSpeciesName ncbiTaxId="32644">Suppressed</sciSpeciesName>
                    <numCopies>3</numCopies>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <engSource>
                        <expSystem ncbiTaxId="32644">Suppressed</expSystem>
                    </engSource>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="3">
                <entry>ligand</entry>
                <sciName>Suppressed</sciName>
                <molWtTheo units="MDa">1e-06</molWtTheo>
                <ligand>
                    <numCopies>3</numCopies>
                    <recombinantExpFlag>false</recombinantExpFlag>
                </ligand>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <cryogenName>ETHANE</cryogenName>
            <humidity>100</humidity>
            <temperature units="Kelvin">277.2</temperature>
            <instrument>FEI VITROBOT MARK IV</instrument>
            <details>Grids were blotted for 4 s. </details>
        </vitrification>
        <imaging>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">46.18</electronDose>
            <energyFilter>GIF Quantum LS</energyFilter>
            <imagingMode>BRIGHT FIELD</imagingMode>
            <nominalDefocusMin units="nm">1300.0</nominalDefocusMin>
            <nominalDefocusMax units="nm">3500.0</nominalDefocusMax>
            <illuminationMode>FLOOD BEAM</illuminationMode>
            <detector>GATAN K2 SUMMIT (4k x 4k)</detector>
            <calibratedMagnification>75000.0</calibratedMagnification>
            <microscope>FEI TITAN KRIOS</microscope>
            <specimenHolderModel>FEI TITAN KRIOS AUTOGRID HOLDER</specimenHolderModel>
            <acceleratingVoltage units="kV">300</acceleratingVoltage>
        </imaging>
        <imageAcquisition>
            <numDigitalImages>3027</numDigitalImages>
            <samplingSize units="microns">5.0</samplingSize>
            <details>Dose rate = 1.28 e- A^-2 per frame</details>
        </imageAcquisition>
        <fitting>
            <pdbEntryIdList>
                <pdbEntryId>6EGU</pdbEntryId>
                <pdbChainId>A</pdbChainId>
            </pdbEntryIdList>
            <refProtocol>flexible</refProtocol>
            <targetCriteria>Cross-correlation coefficient</targetCriteria>
            <overallBValue>82.0</overallBValue>
            <refSpace>REAL</refSpace>
            <details>A homology model was built from PDB:6EGU using the Swiss-Model server (swissmodel.expasy.org). The model was docked as a rigid body into the density with UCSF Chimera prior to refinement.</details>
        </fitting>
        <specimenPreparation>
            <specimenState>particle</specimenState>
            <specimenConc units="mg/ml">0.025</specimenConc>
            <buffer>
                <ph>8.0</ph>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>singleParticle</method>
        <reconstruction>
            <algorithm>FOURIER SPACE</algorithm>
            <software>RELION</software>
            <resolutionByAuthor>3.76</resolutionByAuthor>
            <resolutionMethod>FSC 0.143 CUT-OFF</resolutionMethod>
        </reconstruction>
        <singleParticle>
            <appliedSymmetry>C3</appliedSymmetry>
            <numProjections>197145</numProjections>
        </singleParticle>
    </processing>
</emdEntry>