2022-04-06 OBS PDBe PDBe PDBe 2019-03-05 2019-03-27 2020-03-18 2022-04-06 2022-04-06 2022-04-06 EMD-13898 The structure of tetrameric cyanobacterial Photosystem I of Chroococcidiopsis sp. TS-821 Semchonok DA Ramirez-Aportela E Sorzano COS Boekema EJ Bruce BD Guskov A Semchonok DA Boekema EJ Bruce BD Ramirez-Aportela E Sorzano COS Guskov A The structure of tetrameric Photosystem I To Be Published 0353 EMD-4659 associated EM volume
The structure of tetrameric cyanobacterial Photosystem I of Chroococcidiopsis sp. TS-821
 6qwj FULLOVERLAP Photosystem I Photosystem I 0 1 2 3 4 5 6 7 8 9 10 11 Chroococcidiopsis sp. TS-821 1.6 Photosystem I P700 chlorophyll a apoprotein A1 Chroococcidiopsis sp. TS-821 0.083352641 4 LEVO MTMSPPEREEKKARVIVDNDPVPTSFEKWGQPGHFDRTLAKGPKTTTWIWNLHALAHDFDTHTSDLEDISRKIFAAHFGQ LAVIFLWLSGMEFHGARFSNYEAWLSDPIGIKPSAQVVWPIVGQDILNADVGGGFHGIQITSGLFQVWRAAGFTNSFQLY VTAIGGLVAAALMLFAGWFHYHKRAPKLEWFQNAESMLNHHLAGLLGLGCLSWAGHQIHVALPVNKLLDAGVAPKDIPLP HEFILNNSLMAELYPSFAKGLTPFWTLNWGQYADFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGH SIKEILENHKGPFTGDGHKGLYENMTTSWHAQLGTNLAMLGSLTIIVAHHMYAMPPYPYLATDYATALSIFTHHMWIGGF LIVGGAAHATIFMVRDYDPAVNQNNVLDRVIRHRDAIISHLNWVCMFLGFHSFGLYIHNDTMQALGRPQDMFSDTAIQLQ PVFAQFVQNIHTLAPGSTAPNALEPVSYAFGGGVVAVGGKIAMMPIALGTADFMIHHIHAFQIHVTVLILLKGFLFARNS RLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMFNTIAIAVYHFSWKMQSDVWGTIDPDGTIAHITGGNFAMSA NTINGWLRDYQWAQAAQVIQSYGSALSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPTIQPRALS IIQGRAVGVAHYLLGAIVTIWAFFEARIISVG 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Chroococcidiopsis sp. TS-821 0.082656156 4 LEVO MATKFPKFSQDLAQDPTTRRLWYGIATAHDFETHDGMTEENLYQKLFATHFGHVAIIFLWTSSLLFHVAWQGNFEQWIKD PLNVRPIAHAIWDPHFGKAAVDAFTQAGATYPVNIAYSGVYHWWYTIGMRTNNDLYSGAVFLLILAGVFLFAGWLHLQPK FRPSLSWFKSAEPRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLTTLPHPEGLRPFFTGNWGVYAANPDTA NHVFGTSQGAGTAILTFLGGFHPQTQSLWLTDMAHHHLAIAVLFIIAGHMYRTNFGIGHSIKEMLNAKNFFGTKTEGQFN LPHQGLYDTINNSLHFQLSLALAALGTITSLVAQHMYALPPYAFMGQDFTTQAALYTHHQYIAVFLMVGAFAHAGIFWVR DYDAEQNKGNVLDRVLQHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPVFAQFIQASHGKVLYGLNT LLSNPDSVASTAGAAWLPGWLDAINNGTNSLFLTIGPGDFLVHHAFALGIHTTVLVLVKGALDARGSKLMPDKKDFGYAF PCDGPGRGGTCDISAWDAFYLALFWALNTVGWVTFYWHWKHLGIWQGNVAQFNESSTYLMGWLRDYLWLYSAQLINGYNP YGMNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLASLVRWKDKPVAMSIVQGRLVGLAHFTVGY VLTYAAFVIASTAGKFG 1.97.1.12 Photosystem I iron-sulfur center Chroococcidiopsis sp. TS-821 0.008939309 4 LEVO MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAASPRTEDCVGCKRCETACPTDFLSIRVYLSNAETTRSMGL AY 1.97.1.12 Photosystem I reaction center subunit II Chroococcidiopsis sp. TS-821 0.018520025 4 LEVO MAEELSGQTPIFGGSTGGLLTKAFREEKYVITWTSPKEQVFEMPTGGAAIMRQGPNKLELARKEYCIALGGQQLRAKFRI TDYKIYRVYPNGEVQYLHPSDGVFPEKVNEGRQKVGYVDRNIGKNPDPAKLKFSGMTTYNAPGPKSSEAGKGSQDTKSGS LPRQGIEM Photosystem I reaction center subunit IV Chroococcidiopsis sp. TS-821 0.013551098999999999 4 LEVO MVERGSKVRILRKESYWFQDVGVVASVDKSGIRYPVIVRFDKVNYAGVNTNNFAETELVEIEKPTAKAKKATPAATGGKQ TTIDERTRTTGQGTPLKPEAKTTAAPESGEGSSTVVGDANQGTESR Photosystem I reaction center subunit III Chroococcidiopsis sp. TS-821 0.018131969 4 LEVO MRRLFALVLVISLWFSFAPQALAVGAGLVPCSESPEFIQRAASARNTTADPNSGQKRFERYAQELCGPEGLPHLIVDGRL NHAGDFLIPSILFLYIAGWIGWVGRAYLQEIKKRDNTELREVIIDVPTALPLMLSGFTWPLAAVKELLSGELVAKDDEIP VSPR Photosystem I reaction center subunit VIII Chroococcidiopsis sp. TS-821 0.004194028 4 LEVO MFSASFLPSILVPLTGLVFPAIAMALLLIYVEREDPSGI Photosystem I reaction center subunit IX Chroococcidiopsis sp. TS-821 0.0057608320000000005 4 LEVO MQKKGDNQNYLLRYLSLGPVLLFAWLSFTAVLLIVFNYLYPDLLFHPLP Photosystem I reaction center subunit PsaK Chroococcidiopsis sp. TS-821 0.00975361 4 LEVO MTDLILLAAVQSTVPDTVRWSWTGSAIIIGASLVILFIASRTIRFPQVGPKMPLPFPALFNNPSVGTVLGSVSLGHIVGI GIILGLNNLGILK Photosystem I reaction center subunit XI Chroococcidiopsis sp. TS-821 0.018503156 4 LEVO MAQAIDASKNRPSDPRNQEVVYPSRRDPQIGNLETPINNSSLVKWFINNLPAYRPGITPLRRGLEVGMAHGYWLLGPFAK LGPLRDTDVANIAGLLATLGMVVISTLAVSLYAATDPPKPVATVTVPNPPDTFDTTEGWNTFASGFLIGGVGGAVVAYFI LANIELIQNIFK Photosystem I reaction center subunit XII Chroococcidiopsis sp. TS-821 0.003382063 4 LEVO MSISDTQVFVALVIALIPGVLAFRLATELYK CHLOROPHYLL A 0.000893489 362 CLA PHYLLOQUINONE 0.000450696 8 PQN IRON/SULFUR CLUSTER 0.00035163999999999996 12 SF4 singleParticle particle 0.32 6.5 50.0 C6H13NO4S MES 10.0 MgCl2 magnesium chloride 5.0 CaCl2 calcium chloride 0.01 C24H46O11 DDM Quantifoil R2/2 COPPER 400 CARBON HOLEY 2.0 GLOW DISCHARGE ETHANE 90 293 FEI VITROBOT MARK III FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 4845 12.0 4.3 1 3243 CTFFIND 4 grigoriefflab Scipion 1.1 xmipp3 - ctf estimation 1JB0 C2 4.5 FSC 0.143 CUT-OFF Scipion 1.2 xmipp3 - highres 60561 OTHER Scipion 1.1 xmipp3 - ransac OTHER 3 50000.0 Scipion 1.1 relion - 3D classification emd_4659.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 466.2 466.2 466.2 90.0 90.0 90.0 X Y Z -0.021181699 0.09771493 0.00013295784 0.0024011924 1.11 1.11 1.11 0.02 AUTHOR None 1JB0 FLEXIBLE FIT REAL emd_4659_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 466.2 466.2 466.2 90.0 90.0 90.0 Z Y X -6.7531905 37.618797 -4.8554385e-12 1.0 1.11 1.11 1.11 AUTHOR None