<?xml version='1.0' encoding='utf-8'?>
<emdEntry accessCode="4582" version="1.9.6" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v1/v1_9/emdb_v1_9_6.xsd">
    <admin>
        <lastUpdate>2019-09-04</lastUpdate>
    </admin>
    <deposition>
        <status>OBS</status>
        <depositionDate>2019-02-01</depositionDate>
        <depositionSite>PDBe</depositionSite>
        <processingSite>PDBe</processingSite>
        <headerReleaseDate>2019-06-05</headerReleaseDate>
        <obsoletedDate>2019-09-04</obsoletedDate>
        <title>Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1</title>
        <authors>Faelber K, Dietrich L, Noel J, Wollweber F, Pfitzner A, Muehleip A, Sanchez R, Kudryashev M, Chiaruttin N, Lilie H, Schleger J, Rosenbaum E, Hessenberger M, Matthaeus C, Noe F, Roux A, van der Laan M, Kuehlbrandt W, Daumke O</authors>
        <primaryReference published="false">
            <journalArticle>
                <authors>Faelber K, Dietrich L, Noel J, Wollweber F, Pfitzner A, Muehleip A, Sanchez R, Kudryashev M, Chiaruttin N, Lilie H, Schleger J, Rosenbaum E, Hessenberger M, Matthaeus C, Noe F, Roux A, van der Laan M, Kuehlbrandt W, Daumke O</authors>
                <articleTitle>Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1</articleTitle>
                <journal>to be published</journal>
                <externalReference type="csd">0353</externalReference>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file format="CCP4" sizeKb="6913" type="map">emd_4582.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numRows>120</numRows>
            <numColumns>120</numColumns>
            <numSections>120</numSections>
        </dimensions>
        <origin>
            <originRow>0.0</originRow>
            <originCol>0.0</originCol>
            <originSec>0.0</originSec>
        </origin>
        <limit>
            <limitRow>119.0</limitRow>
            <limitCol>119.0</limitCol>
            <limitSec>119.0</limitSec>
        </limit>
        <spacing>
            <spacingRow>120</spacingRow>
            <spacingCol>120</spacingCol>
            <spacingSec>120</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">324.0</cellA>
            <cellB units="A">324.0</cellB>
            <cellC units="A">324.0</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-3.9019773</minimum>
            <maximum>8.722034000000001</maximum>
            <average>0.33431122</average>
            <std>1.2417784</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details />
        <pixelSpacing>
            <pixelX units="A">2.7</pixelX>
            <pixelY units="A">2.7</pixelY>
            <pixelZ units="A">2.7</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">2.0</contourLevel>
        <annotationDetails>Subtomogram average map filtered to 15 Angstroms</annotationDetails>
    </map>
    <sample>
        <numComponents>2</numComponents>
        <name>Mgm1</name>
        <details>short isoform with C- and N-terminal truncations</details>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>protein</entry>
                <sciName>Mgm1</sciName>
                <details>short isoform with C- and N-terminal truncations</details>
                <protein>
                    <sciSpeciesName ncbiTaxId="209285">Chaetomium thermophilum</sciSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <engSource>
                        <expSystem ncbiTaxId="562">Escherichia coli</expSystem>
                    </engSource>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="2">
                <entry>protein</entry>
                <sciName>Mgm1</sciName>
                <protein>
                    <sciSpeciesName ncbiTaxId="209285">Chaetomium thermophilum</sciSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <engSource>
                        <expSystem ncbiTaxId="562">Escherichia coli</expSystem>
                    </engSource>
                </protein>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <cryogenName>ETHANE</cryogenName>
            <humidity>70</humidity>
            <temperature units="Kelvin">277.15</temperature>
            <instrument>FEI VITROBOT MARK IV</instrument>
            <details />
        </vitrification>
        <imaging>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">2.0</electronDose>
            <imagingMode>BRIGHT FIELD</imagingMode>
            <nominalDefocusMin units="nm">2000.0</nominalDefocusMin>
            <nominalDefocusMax units="nm">4000.0</nominalDefocusMax>
            <illuminationMode>FLOOD BEAM</illuminationMode>
            <detector>GATAN K2 SUMMIT (4k x 4k)</detector>
            <nominalCs units="mm">2.7</nominalCs>
            <microscope>FEI TITAN KRIOS</microscope>
            <specimenHolderModel>FEI TITAN KRIOS AUTOGRID HOLDER</specimenHolderModel>
            <acceleratingVoltage units="kV">300</acceleratingVoltage>
            <nominalMagnification>53000.0</nominalMagnification>
        </imaging>
        <imageAcquisition />
        <specimenPreparation>
            <specimenState>particle</specimenState>
            <specimenConc units="mg/ml">5</specimenConc>
            <buffer>
                <ph>7.4</ph>
                <details>20 mM HEPES, 200 mM NaCl, residual MgCl2, 9mM KCl.</details>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>subtomogramAveraging</method>
        <reconstruction>
            <algorithm>BACK PROJECTION</algorithm>
            <software>Dynamo</software>
            <ctfCorrection>CTF determination was done by Gctf and correction was performed by ctfphaseflip from IMOD</ctfCorrection>
            <resolutionByAuthor>14.7</resolutionByAuthor>
            <resolutionMethod>FSC 0.143 CUT-OFF</resolutionMethod>
            <details>Half sets were generated not even-odd but as upper- and lower-halves of particles in given tomograms</details>
            <eulerAnglesDetails>Subtomogram averaging by cross correlation maximization</eulerAnglesDetails>
        </reconstruction>
        <subtomogramAveraging>
            <appliedSymmetry>C1</appliedSymmetry>
            <numSubtomograms>11474</numSubtomograms>
            <numClassAverages>1</numClassAverages>
        </subtomogramAveraging>
    </processing>
</emdEntry>
