<?xml version='1.0' encoding='utf-8'?>
<emdEntry accessCode="4570" version="1.9.6" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v1/v1_9/emdb_v1_9_6.xsd">
    <admin>
        <lastUpdate>2019-06-19</lastUpdate>
    </admin>
    <deposition>
        <status>OBS</status>
        <depositionDate>2019-01-28</depositionDate>
        <depositionSite>PDBe</depositionSite>
        <processingSite>PDBe</processingSite>
        <headerReleaseDate>2019-03-27</headerReleaseDate>
        <mapReleaseDate>2019-03-27</mapReleaseDate>
        <obsoletedDate>2019-06-19</obsoletedDate>
        <supersededByList>
            <entry>EMD-10057</entry>
        </supersededByList>
        <title>Polar flagellar motor from Plesiomonas shigelloides</title>
        <authors>Ferreira JF, Beeby M</authors>
        <primaryReference published="true">
            <journalArticle>
                <authors>Ferreira JL, Gao FZ, Rossmann FM, Nans A, Brenzinger S, Hosseini R, Wilson A, Briegel A, Thormann KM, Rosenthal PB, Beeby M</authors>
                <articleTitle>gamma-proteobacteria eject their polar flagella under nutrient depletion, retaining flagellar motor relic structures.</articleTitle>
                <journal>Plos Biol.</journal>
                <volume>17</volume>
                <firstPage>e3000165</firstPage>
                <lastPage>e3000165</lastPage>
                <year>2019</year>
                <externalReference type="pubmed">30889173</externalReference>
                <externalReference type="doi">doi:10.1371/journal.pbio.3000165</externalReference>
                <externalReference type="issn">1545-7885</externalReference>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file format="CCP4" sizeKb="256001" type="map">emd_4570.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numRows>400</numRows>
            <numColumns>400</numColumns>
            <numSections>400</numSections>
        </dimensions>
        <origin>
            <originRow>-200.0</originRow>
            <originCol>-200.0</originCol>
            <originSec>-200.0</originSec>
        </origin>
        <limit>
            <limitRow>199.0</limitRow>
            <limitCol>199.0</limitCol>
            <limitSec>199.0</limitSec>
        </limit>
        <spacing>
            <spacingRow>400</spacingRow>
            <spacingCol>400</spacingCol>
            <spacingSec>400</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">1085.2001</cellA>
            <cellB units="A">1085.2001</cellB>
            <cellC units="A">1085.2001</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-0.19750887</minimum>
            <maximum>0.20718084</maximum>
            <average>-0.0016553595</average>
            <std>0.02774663</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details />
        <pixelSpacing>
            <pixelX units="A">2.7130003</pixelX>
            <pixelY units="A">2.7130003</pixelY>
            <pixelZ units="A">2.7130003</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">0.0399</contourLevel>
        <annotationDetails>Flagellar motor from Plesiomonas shigelloides</annotationDetails>
    </map>
    <sample>
        <numComponents>1</numComponents>
        <name>Flagellar motor from Plesiomonas shigelloides</name>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>protein</entry>
                <sciName>Flagellar motor from Plesiomonas shigelloides</sciName>
                <protein>
                    <sciSpeciesName ncbiTaxId="1354269">Plesiomonas shigelloides ATCC 14029</sciSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <natSource>
                        <cellLocation>cell envelope</cellLocation>
                    </natSource>
                    <engSource />
                </protein>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <cryogenName>OTHER</cryogenName>
            <humidity>100</humidity>
            <instrument>FEI VITROBOT MARK IV</instrument>
            <details />
        </vitrification>
        <imaging>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">1.5</electronDose>
            <imagingMode>BRIGHT FIELD</imagingMode>
            <illuminationMode>FLOOD BEAM</illuminationMode>
            <detector>GATAN K2 SUMMIT (4k x 4k)</detector>
            <microscope>FEI TITAN KRIOS</microscope>
            <specimenHolderModel>OTHER</specimenHolderModel>
            <acceleratingVoltage units="kV">300</acceleratingVoltage>
        </imaging>
        <imageAcquisition />
        <specimenPreparation>
            <specimenState>particle</specimenState>
            <buffer>
                <ph>7.4</ph>
                <details>Cells grown in LB</details>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>subtomogramAveraging</method>
        <reconstruction>
            <software>PEET</software>
            <resolutionByAuthor>33.0</resolutionByAuthor>
            <resolutionMethod>FSC 0.5 CUT-OFF</resolutionMethod>
        </reconstruction>
        <subtomogramAveraging>
            <appliedSymmetry>C13</appliedSymmetry>
            <numSubtomograms>424</numSubtomograms>
        </subtomogramAveraging>
    </processing>
</emdEntry>