<?xml version='1.0' encoding='utf-8'?>
<emd emdb_id="EMD-4523" version="3.0.2.6" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_6/emdb.xsd">
    <admin>
        <current_status>
            <date>2021-11-22</date>
            <code>OBS</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2019-01-02</deposition>
            <header_release>2021-12-01</header_release>
            <obsolete>2021-12-01</obsolete>
            <update>2021-11-22</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Spanish Ministry of Economy and Competitiveness</funding_body>
                <code>BFU2017-88736-R</code>
                <country>Spain</country>
            </grant_reference>
        </grant_support>
        <title>HPBV HtCP</title>
        <authors_list>
            <author>Caston JR</author>
            <author>Ortega-Esteban A</author>
            <author>Mata CP</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="false">
                    <author order="1">Caston JR</author>
                    <author order="2">Ortega-Esteban A</author>
                    <author order="3">Mata CP</author>
                    <title>HPBV CP</title>
                    <journal_abbreviation>To Be Published</journal_abbreviation>
                    <external_references type="CSD">0353</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-4523</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
                <details>HPBV HtCP</details>
            </emdb_reference>
        </emdb_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>6qdp</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Human picobirnavirus</name>
        <supramolecule_list>
            <virus_supramolecule supramolecule_id="1">
                <name>Human picobirnavirus</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <sci_species_name ncbi="145856">Human picobirnavirus</sci_species_name>
                <host_system database="NCBI">
                    <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
                    <recombinant_plasmid>pRSET</recombinant_plasmid>
                </host_system>
                <virus_shell shell_id="1">
                    <name>Capsid Protein</name>
                    <diameter units="Å">380.0</diameter>
                    <triangulation>1</triangulation>
                </virus_shell>
                <virus_type>VIRUS-LIKE PARTICLE</virus_type>
                <virus_isolate>STRAIN</virus_isolate>
                <virus_enveloped>false</virus_enveloped>
                <virus_empty>true</virus_empty>
            </virus_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Capsid protein precursor</name>
                <natural_source database="NCBI">
                    <organism ncbi="145856">Human picobirnavirus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.066223703</theoretical>
                </molecular_weight>
                <details>Chain B: The side chains of residues from aa77 to aa80 were not well solved and substituted by alanines. The side chain of the residue 588aa was not well solved and substituted by an alanine.Chain A: The side chains of residues aa79 and aa80 were not well solved and substituted by alanines.</details>
                <number_of_copies>2</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MRGSHHHHHHGMASMTGGQQMGRDLYDDDDKDRWGSMKQNDTKKTTQRRNSKKYSSKTNRGTKRAPRDQEVGTGAQESTR
NDVAWYARYPHILEEATRLPFAYPIGQYYDTGYSVASATEWSKYVDTSLTIPGVMCVNFTPTPGESYNKNSPINIAAQNV
YTYVRHMNSGHANYEQADLMMYLLAMDSLYIFHSYVRKILAISKLYTPVNKYFPRALLVALGVDPEDVFANQAQWEYFVN
MVAYRAGAFAAPASMTYYERHAWMSNGLYVDQDVTRAQIYMFKPTMLWKYENLGTTGTKLVPLMMPKAGDNRKLVDFQVL
FNNLVSTMLGDEDFGIMSGDVFKAFGADGLVKLLAVDSTTMTLPTYDPLILAQIHSARAVGAPILETSTLTGFPGRQWQI
TQNPDVNNGAIIFHPSFGYDGQDHEELSFRAMCSNMILNLPGEAHSAEMIIEATRLATMFQVKAVPAGDTSKPVLYLPNG
FGTEVVNDYTMISVDKATPHDLTIHTFFNNILVPNAKENYVANLELLNNIIQFDWAPQLYLTYGIAQESFGPFAQLNDWT
ILTGETLARMHEVCVTSMFDVPQMGFNK</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                        <component>
                            <concentration units="mM">50.0</concentration>
                            <formula>NaCl</formula>
                        </component>
                        <component>
                            <concentration units="mM">25.0</concentration>
                            <formula>TrisHCl</formula>
                        </component>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <instrument>LEICA EM CPC</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <c2_aperture_diameter units="µm">70.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">0.8</nominal_defocus_min>
                    <calibrated_defocus_min units="µm">0.306</calibrated_defocus_min>
                    <nominal_defocus_max units="µm">3.5</nominal_defocus_max>
                    <calibrated_defocus_max units="µm">4.04</calibrated_defocus_max>
                    <nominal_magnification>50000.0</nominal_magnification>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON III (4k x 4k)</film_or_detector_model>
                            <detector_mode>INTEGRATING</detector_mode>
                            <average_electron_dose_per_image units="e/Å^2">1.56</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>CTFFIND</name>
                        </software>
                    </software_list>
                </ctf_correction>
                <startup_model type_of_model="OTHER">
                    <details>Human Picobirnavirus CP model</details>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>I</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="Å">2.8</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                    <number_images_used>30342</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="256001">
        <file>emd_4523.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>400</col>
            <row>400</row>
            <sec>400</sec>
        </dimensions>
        <origin>
            <col>-200</col>
            <row>-200</row>
            <sec>-200</sec>
        </origin>
        <spacing>
            <x>400</x>
            <y>400</y>
            <z>400</z>
        </spacing>
        <cell>
            <a units="Å">426.00003</a>
            <b units="Å">426.00003</b>
            <c units="Å">426.00003</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.2766266</minimum>
            <maximum>0.5237844</maximum>
            <average>0.0018516082</average>
            <std>0.041539915</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.065</x>
            <y units="Å">1.065</y>
            <z units="Å">1.065</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.1</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-4523::::</label>
        <annotation_details>HPBV HtCP VLP</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>