<?xml version="1.0" encoding="UTF-8"?>
<emdEntry accessCode="4220" version="1.9.6">
    <admin>
        <lastUpdate>2018-06-27</lastUpdate>
    </admin>
    <deposition>
        <status>OBS</status>
        <depositionDate>2017-12-18</depositionDate>
        <depositionSite>PDBe</depositionSite>
        <processingSite>PDBe</processingSite>
        <headerReleaseDate>2018-01-17</headerReleaseDate>
        <obsoletedDate>2018-06-27</obsoletedDate>
        <title>Teneurin3 dimer</title>
        <authors>Janssen BJC, Meijer DHM</authors>
        <primaryReference published="false">
            <journalArticle>
                <authors>Jackson VA, Meijer DHM, Carrasquero M, van Bezouwen LS, Lowe ED, Kleanthous C, Janssen BJC, Seiradake E</authors>
                <articleTitle>Structures of Teneurin adhesion receptors reveal an ancient fold for cell-cell interaction</articleTitle>
                <journal>To Be Published</journal>
                <externalReference type="csd">0353</externalReference>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file type="map" format="CCP4" sizeKb="28312">emd_4220.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numRows>192</numRows>
            <numColumns>192</numColumns>
            <numSections>192</numSections>
        </dimensions>
        <origin>
            <originRow>0.0</originRow>
            <originCol>0.0</originCol>
            <originSec>0.0</originSec>
        </origin>
        <limit>
            <limitRow>191.0</limitRow>
            <limitCol>191.0</limitCol>
            <limitSec>191.0</limitSec>
        </limit>
        <spacing>
            <spacingRow>192</spacingRow>
            <spacingCol>192</spacingCol>
            <spacingSec>192</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">424.32</cellA>
            <cellB units="A">424.32</cellB>
            <cellC units="A">424.32</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-5.0244694</minimum>
            <maximum>12.214872</maximum>
            <average>0.01599125</average>
            <std>0.31951317</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details></details>
        <pixelSpacing>
            <pixelX units="A">2.21</pixelX>
            <pixelY units="A">2.21</pixelY>
            <pixelZ units="A">2.21</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">1.7</contourLevel>
        <annotationDetails>Teneurin3 dimer map</annotationDetails>
    </map>
    <sample>
        <numComponents>2</numComponents>
        <name>Teneurin3 dimer</name>
        <details>Extracellular fragment of Teneurin3</details>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>cellular-component</entry>
                <sciName>Teneurin3 dimer</sciName>
                <molWtTheo units="MDa">0.55</molWtTheo>
                <details>Extracellular fragment of Teneurin3</details>
                <cellular-component>
                    <sciSpeciesName ncbiTaxId="10090">Mus musculus</sciSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <engSource>
                        <expSystem ncbiTaxId="9606">Homo sapiens</expSystem>
                    </engSource>
                </cellular-component>
            </sampleComponent>
            <sampleComponent componentID="2">
                <entry>protein</entry>
                <sciName>Teneurin3 dimer</sciName>
                <protein>
                    <sciSpeciesName ncbiTaxId="10090">Mus musculus</sciSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <engSource>
                        <expSystem ncbiTaxId="9606">Homo sapiens</expSystem>
                    </engSource>
                </protein>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <cryogenName>ETHANE</cryogenName>
            <humidity>95</humidity>
            <instrument>FEI VITROBOT MARK IV</instrument>
            <details></details>
        </vitrification>
        <imaging>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">50.0</electronDose>
            <imagingMode>OTHER</imagingMode>
            <nominalDefocusMin units="nm">1000.0</nominalDefocusMin>
            <nominalDefocusMax units="nm">3000.0</nominalDefocusMax>
            <illuminationMode>OTHER</illuminationMode>
            <detector>FEI FALCON II (4k x 4k)</detector>
            <nominalCs units="mm">2.7</nominalCs>
            <microscope>FEI TALOS ARCTICA</microscope>
            <specimenHolderModel>OTHER</specimenHolderModel>
            <acceleratingVoltage units="kV">200</acceleratingVoltage>
            <nominalMagnification>100000.0</nominalMagnification>
        </imaging>
        <imageAcquisition/>
        <specimenPreparation>
            <specimenState>particle</specimenState>
            <specimenConc units="mg/ml">0.1</specimenConc>
            <buffer>
                <ph>7.8</ph>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>singleParticle</method>
        <reconstruction>
            <software>cryoSPARC</software>
            <resolutionByAuthor>9.6</resolutionByAuthor>
            <resolutionMethod>FSC 0.143 CUT-OFF</resolutionMethod>
        </reconstruction>
        <singleParticle>
            <appliedSymmetry>C1</appliedSymmetry>
            <numProjections>48668</numProjections>
        </singleParticle>
    </processing>
</emdEntry>
