<?xml version="1.0" encoding="UTF-8"?>
<emdEntry accessCode="1436" version="1.9.6">
    <admin>
        <lastUpdate>2013-01-23</lastUpdate>
    </admin>
    <deposition>
        <status prior="REL">OBS</status>
        <depositionDate>2007-09-27</depositionDate>
        <depositionSite>PDBe</depositionSite>
        <processingSite>PDBe</processingSite>
        <headerReleaseDate>2007-09-27</headerReleaseDate>
        <mapReleaseDate>2008-01-18</mapReleaseDate>
        <obsoletedDate>2013-01-23</obsoletedDate>
        <supersededByList>
            <entry>EMD-1711</entry>
        </supersededByList>
        <details>Original map was corrupted</details>
        <title>Structure of an archaeal RNA polymerase.</title>
        <authors>Kusser AG, Bertero MG, Naji S, Becker T, Thomm M, Beckmann R, Cramer P</authors>
        <keywords/>
        <primaryReference published="true">
            <journalArticle>
                <authors>Kusser AG, Bertero MG, Naji S, Becker T, Thomm M, Beckmann R, Cramer P</authors>
                <articleTitle>Structure of an archaeal RNA polymerase.</articleTitle>
                <journal>J.MOL.BIOL.</journal>
                <volume>376</volume>
                <firstPage>303</firstPage>
                <lastPage>307</lastPage>
                <year>2008</year>
                <externalReference type="pubmed">18164030</externalReference>
                <externalReference type="doi">doi:10.1016/j.jmb.2007.08.066</externalReference>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file format="CCP4" sizeKb="5697" type="map">emd_1436.map.gz</file>
        <dataType>Envelope stored as signed bytes</dataType>
        <dimensions>
            <numColumns>180</numColumns>
            <numRows>180</numRows>
            <numSections>180</numSections>
        </dimensions>
        <origin>
            <originCol>0</originCol>
            <originRow>0</originRow>
            <originSec>0</originSec>
        </origin>
        <limit>
            <limitCol>179</limitCol>
            <limitRow>179</limitRow>
            <limitSec>179</limitSec>
        </limit>
        <spacing>
            <spacingCol>180</spacingCol>
            <spacingRow>180</spacingRow>
            <spacingSec>180</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">222.75</cellA>
            <cellB units="A">222.75</cellB>
            <cellC units="A">222.75</cellC>
            <cellAlpha units="degrees">90</cellAlpha>
            <cellBeta units="degrees">90</cellBeta>
            <cellGamma units="degrees">90</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>-128</minimum>
            <maximum>127</maximum>
            <average>-45.8211</average>
            <std>15.4496</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details>::::EMDATABANK.org::::EMD-1436::::</details>
        <pixelSpacing>
            <pixelX units="A">1.2375</pixelX>
            <pixelY units="A">1.2375</pixelY>
            <pixelZ units="A">1.2375</pixelZ>
        </pixelSpacing>
        <contourLevel source="emdb">1</contourLevel>
        <annotationDetails>This is an EM density map of a RNA Polymerase
      from Pyrococcus Furiosus</annotationDetails>
    </map>
    <supplement>
        <maskSet/>
        <sliceSet/>
        <figureSet/>
        <fscSet/>
    </supplement>
    <sample>
        <name>Pyrococcus Furiosus DNA directed RNA Polymerase</name>
        <numComponents>1</numComponents>
        <molWtExp units="MDa">0.38</molWtExp>
        <molWtTheo units="MDa">0.38</molWtTheo>
        <molWtMethod>Mass Spectrometry</molWtMethod>
        <details>The sample was monodisperse and catalytically active</details>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>protein</entry>
                <sciName>RNA Polymerase</sciName>
                <molWtTheo units="MDa">0.38</molWtTheo>
                <molWtExp units="MDa">0.38</molWtExp>
                <protein>
                    <sciSpeciesName ncbiTaxId="2261">Pyrococcus furiosus</sciSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <oligomericDetails>Monomer</oligomericDetails>
                    <synSpeciesName>Archaea</synSpeciesName>
                    <numCopies>1</numCopies>
                    <externalReferences/>
                    <natSource>
                        <organelle>Nucleus</organelle>
                        <cellLocation>Nucleus</cellLocation>
                    </natSource>
                    <engSource/>
                </protein>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <cryogenName>ETHANE</cryogenName>
            <humidity>95</humidity>
            <temperature units="Kelvin">115</temperature>
            <instrument>FEI VITROBOT</instrument>
            <method>Blot 10s</method>
            <details>Vitrification instrument: FEI Vitrobot</details>
        </vitrification>
        <imaging>
            <microscope>FEI TECNAI F30</microscope>
            <specimenHolder>Oxford Instruments</specimenHolder>
            <specimenHolderModel>OTHER</specimenHolderModel>
            <acceleratingVoltage units="kV">300</acceleratingVoltage>
            <illuminationMode>OTHER</illuminationMode>
            <imagingMode>OTHER</imagingMode>
            <electronSource>FIELD EMISSION GUN</electronSource>
        </imaging>
        <imageAcquisition>
            <numDigitalImages>23</numDigitalImages>
        </imageAcquisition>
        <fitting>
            <software>O</software>
            <refSpace>REAL</refSpace>
            <pdbEntryIdList/>
        </fitting>
        <specimenPreparation>
            <specimenConc units="mg/ml">0.1</specimenConc>
            <specimenSupportDetails>Quantifoil R 3/3 grid with 2 nm carbon on top</specimenSupportDetails>
            <specimenState>particle</specimenState>
            <buffer>
                <details>10 mM Hepes pH 7.0, 150 mM KCl, 2.5 mM MgCl2, 5
          mM DTT</details>
                <ph>7.0</ph>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>singleParticle</method>
        <reconstruction>
            <algorithm>Reference Projections</algorithm>
            <software>Signature, SPIDER</software>
            <ctfCorrection>Each Micrograph</ctfCorrection>
            <resolutionByAuthor>13</resolutionByAuthor>
            <resolutionMethod>FSC 0.5</resolutionMethod>
        </reconstruction>
        <singleParticle>
            <numProjections>22240</numProjections>
            <details>Particles were selected maually.</details>
        </singleParticle>
    </processing>
</emdEntry>
